PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy08g00030
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 508aa    MW: 57207.8 Da    PI: 6.1445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy08g00030genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007201223223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     C+ Cg+ F  +  L++H ++ H
  Bathy08g00030 201 MCSMCGRFFEASKGLVTHAQSvH 223
                    6*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868200228IPR007087Zinc finger, C2H2
PROSITE patternPS000280202223IPR007087Zinc finger, C2H2
SMARTSM002482900274305IPR002110Ankyrin repeat
PROSITE profilePS5029728.433274507IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.9E-42275503IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.78E-40278501IPR020683Ankyrin repeat-containing domain
PfamPF127962.2E-9283374IPR020683Ankyrin repeat-containing domain
CDDcd002046.10E-22305433No hitNo description
SMARTSM0024837310340IPR002110Ankyrin repeat
SMARTSM002480.38345375IPR002110Ankyrin repeat
CDDcd002045.73E-21374499No hitNo description
SMARTSM002480.31379409IPR002110Ankyrin repeat
PfamPF127964.6E-11384469IPR020683Ankyrin repeat-containing domain
SMARTSM002480.027413442IPR002110Ankyrin repeat
SMARTSM00248380446475IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDDENALRAD IQNFLVTTAK SFLPNQLVDD VFQLARNVVT KTTRKGSADF ACKAFVCLFA  60
TLKRMATSGR GAEDEDEEEE TDEEEDENAI REALLKSTTM NTPNTTTSTK NEKNYHLCYR  120
RKAGESDVRV LVLYRVTAYG LVHRSEYADS IALCDAVYEN MDASQIHKVG IADIRTCPKS  180
GTMRILTKKR LAEHAKMGEL MCSMCGRFFE ASKGLVTHAQ SVHKHSYEQG KHLQQTARNS  240
LIDLTNIDAL QREYLLSRFT EVLGEEETKK KATPALHPLL EICKTNNVEN ARQFLRENPD  300
ADVNDICDQH GSNCLHWSSG SNALELCKFL CDEVGMDPAF AERKKGRAAI HWASRNGCLE  360
VLVWLIEEKG IDKDCEMSDG TTPFMRAAWM GHLELCEYLV KVANCDIHRE NKYRCNAVHW  420
AAQSGDVKML KYLRALGLDV TSANVNGHSI LHKSATKGFY DACVYLVEEL DLPLLRDNDG  480
YGPEDMAKME GHKELASWLK DRRSRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n0r_A9e-1634646821224 ankyrin repeats
5et0_A3e-1531150042327Espin
5et0_C3e-1531150042327Espin
5et1_A3e-1531150041326Espin
5et1_B3e-1531150041326Espin
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822710.0FO082271.1 Bathycoccus prasinos genomic : Chromosome_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511511.10.0PREDICTED: similar to ankyrin 2,3/unc44
TrEMBLK8EHJ60.0K8EHJ6_9CHLO; PREDICTED: similar to ankyrin 2,3/unc44
STRINGXP_007511511.10.0(Bathycoccus prasinos)