PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g04150
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family GATA
Protein Properties Length: 741aa    MW: 82376.6 Da    PI: 8.4316
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g04150genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27.2e-16699733135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C  Cg t+Tp+WR+g  g+ktLCn CG+ yrk+ l
  Bathy04g04150 699 CFECGITQTPQWRQGQHGPKTLCNRCGVAYRKRQL 733
                    99******************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-8693738IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-11696733No hitNo description
CDDcd002025.33E-10699731No hitNo description
PfamPF003201.0E-13699733IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.093699729IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-12699732IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440699724IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MTLTLMKTRA ALERQRRGAQ KQKRVVRRFN NNNNNNNNNN NNNNNNSSNN NVSDDDVVSS  60
PATKKTKKKK KTKGGAEQQR QQQPVLTTTT TTIQKTIQTK KKRKKRSGGT LKTLKARPRT  120
KKSSSEKTKV AVSAAALPPA PPPMNTTTTT AQGPLLFSDD DTDDDAALFW KEIDADPEDF  180
FSFDNDASNT NNTTTNNNVD VGVDTTGGGD TDARSSGSIV APMSLEETTT DAYYFGADMR  240
VAKTPERVVC TVNCKTSSPG GECGDDGSGE MFFVPTPAAS GDRAVVITTP DFCSRRDRGE  300
IVLQEEEEAE EDVDGGSSRN YLEDLAAMHG IVLRSTDGDD DDFYDDDDID DDLTEENVKT  360
ATTTTEDSTV TYEDHANNNS NTTIDNDEKR RKAKKSSTTT TTTTSQTSIS NAKKDAERLK  420
RLASRKRWEA TLKTYTAIER TSVAEEKLQN LEEVALREKI FLKTEGKNGG AVRNKKRSNG  480
KDNTYDEDVV SESLKKHAVE HVSNMSSEED LLAPVAKKHK RKRRARRELQ RRVIVKPNAL  540
LFTGTTKENV PPATTTFDDV VVNESLFEEE EEEEGRGRDG GDEEAQRGRT TRTRKRQREQ  600
RHSKEREQRQ KKGATTNSSF STLFDDVDDY FYQDDNSTKK PPRKKKYQKK EKNKAEKAAA  660
EKEEATETKV NISAVVGTDA KATDVIVCST TGRERVIGCF ECGITQTPQW RQGQHGPKTL  720
CNRCGVAYRK RQLLNSSALF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105KKKRKKR
2100104KKRKK
3520527RKRRARRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513416.10.0Gat2p
TrEMBLK8ED780.0K8ED78_9CHLO; Gat2p
STRINGXP_007513416.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.29e-10GATA family protein