PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g00780
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 489aa    MW: 57949.8 Da    PI: 9.6013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g00780genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-10266307346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       W+ eE  +l+ +v ++G+  W+ I +++g  R + +c++++++
    Bathy02g00780 266 EWSDEEKVRLKSLVDRYGNTAWNEIGKRLG--RDGQNCRDKYRS 307
                      7****************************8..**********96 PP
2Myb_DNA-binding24.47e-08321388148
                      TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqkyl 48 
                      +gr++ eE  ++ +  +++  +                    +W+ +a+++g +R++k+c  +w ++l
    Bathy02g00780 321 KGRFSDEERAKFRKIMEEYYEEhgielgnpedgkhgefldniSWTVVAKKLGGNRSEKSCFTHWKNVL 388
                      7999****999999988888888888***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.6172252IPR017877Myb-like domain
SMARTSM007170.21176254IPR001005SANT/Myb domain
SuperFamilySSF466892.86E-11232312IPR009057Homeodomain-like
PROSITE profilePS512949.856259313IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-9260309IPR009057Homeodomain-like
SMARTSM007172.4E-6263311IPR001005SANT/Myb domain
CDDcd001671.46E-4266306No hitNo description
PfamPF139211.2E-10267329No hitNo description
PROSITE profilePS500907.84316388IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.4E-9318388IPR009057Homeodomain-like
SuperFamilySSF466895.46E-5319390IPR009057Homeodomain-like
SMARTSM007177.5E-10320390IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MGDLKAVFSS LLGKESAKKV RKDKDKDKKK DKRKREKKEK KKKKKEKGKD KTKEKIGRRI  60
EKKKKKKEVE EEEEEEPEEN QRNGRAQQEL PLQQVDGYEI YEEEEEEEEE EVQEHRGQSV  120
PRKRKKKEIL KPRADKSRKK PKENNDDDDD DDVQVAGEQE GRKNWKWNAH NLEGQKYGQW  180
SETEQEALTN ALETWCRSNR CLDKFNRKDY SFLLRERNQS RRELDKTIYY EISAEVNTRN  240
PQQCYERIRR TLIRSAKGAD ELRNKEWSDE EKVRLKSLVD RYGNTAWNEI GKRLGRDGQN  300
CRDKYRSTFD IFDENRGEVK KGRFSDEERA KFRKIMEEYY EEHGIELGNP EDGKHGEFLD  360
NISWTVVAKK LGGNRSEKSC FTHWKNVLAA GEKGDFMVEN GAWGGYDDDA SLLEQVKEQC  420
ISDEMNEVDV DFSLITVPGR SQTQIVRRWK FLKQRTDTRK VKALSKKIEK YEAKVVKERR  480
KEARRRVS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12744KKKDKRKREKKEKKKKKK
23644KKEKKKKKK
34264KKKEKGKDKTKEKIGRRIEKKKK
4121125RKRKK
5121127RKRKKKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514795.10.0predicted protein
TrEMBLK8ERK10.0K8ERK1_9CHLO; Uncharacterized protein
STRINGXP_007514795.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.24e-07myb domain protein 4r1