PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g03260
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family ERF
Protein Properties Length: 603aa    MW: 61925.7 Da    PI: 10.2948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g03260genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.9e-18374424155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GVr+++ +g+++AeIrdp+    r  r +lg+f++ae+Aa a++aa+++++g
  Bathy01g03260 374 SIYRGVRQRP-WGKFAAEIRDPT----RgSRLWLGTFDSAEDAALAYDAAARAIRG 424
                    57********.**********84....35***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-21374432IPR016177DNA-binding domain
CDDcd000183.91E-17374432No hitNo description
PfamPF008471.2E-11374424IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-30375432IPR001471AP2/ERF domain
SMARTSM003805.5E-34375438IPR001471AP2/ERF domain
PROSITE profilePS5103222.431375432IPR001471AP2/ERF domain
PRINTSPR003679.8E-10376387IPR001471AP2/ERF domain
PRINTSPR003679.8E-10398414IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005730Cellular Componentnucleolus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MGFFNPAATI GFPNMFGTTN TSAGGYQPGG IDPATVAAFA SGFYAHSAPA GKSTGASGRG  60
FLQATTSTSS GNAQQSQQQQ QQQQQQMQQQ MQVLGTSPTF YGSSPTAAPM PSRATIGGGT  120
AAQQNAAAQA AAQAAANFMN NVAAMNNAVA SHQKETLALL QQQQQQNFHN QARRGSSEDS  180
GSFGATAAAN AAAMSNSPGF SLQTPQMPAW TKGLSSSVGN SAGTQVTLGS SPNSGFSTFS  240
PVNHSQRGSA SFNYGHVGAG NATSNQLDKQ QQQQPSVGRR NSTSGRHAFE GRNSSLSASP  300
SSSPPVRGGG VQKSTKNDPS VLKRNNLSNN AAFVEGLASA AAASKAVANA DGGSNDGSKE  360
ATAGKTASGK AQKSIYRGVR QRPWGKFAAE IRDPTRGSRL WLGTFDSAED AALAYDAAAR  420
AIRGDAAVTN FAKDVVIPEH VRAQLPPLPV RDENGNIIET HGHTSGNAPG NAKKGGNSKK  480
QQITPGGLAP EFANSTPTVQ KESKKKNKGG LPSEDASMLM MLSGAALLDD NDSPNTTNDG  540
SKSTNTTEDA EALQDMDMDD AEAINTSTNA PKLNLKGSKT KGKGKSTKNV ADAMTSAMNH  600
KY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21376431662ATERF1
3gcc_A1e-21376431662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515094.10.0unknown
TrEMBLK8EXL60.0K8EXL6_9CHLO; Uncharacterized protein
STRINGXP_007515094.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.19e-14ERF family protein