PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA037985-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 456aa MW: 52424.8 Da PI: 8.4663

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA037985-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.7	2.2e-14	63	127	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 +fY++YA+++GF+vrks++kk+ r+ +Cs+eg+++ +k ++++++r++ +++tgCka +kvk+ BGIOSGA037985-PA 63 DFYEKYAYHAGFDVRKSRTKKT-------IREICCSREGHHKFHKGDESERERNHRTKKTGCKAYMKVKNVM 127 6*************998776.......6899********99999999*************9864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-9	63	126	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-14	260	325	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MDPQEKNSQS TSFGARKTIT GKTRVKYCKT MDNMAMLFHC SGLDDDIVPK QNMVFKDNDS 60 VYDFYEKYAY HAGFDVRKSR TKKTIREICC SREGHHKFHK GDESERERNH RTKKTGCKAY 120 MKVKNVMVDG EVSSVCTMLL CLSIKHMRSH KHRDDTIMEF LNTMQENRVA QNNLIGVLAD 180 MHGGQENILF TSRNLENRKA ANVRAENADD INKLLEFFKE CKKDNPQFYW EAQLDEYGVL 240 KNLFWSHASC QVAYADFGDV VTFDTIYKKN IYEMPLAMFV GSNHHLQNTL FGCALLRDEK 300 ESFEWLFNTF KTCMADWPEP RCILIGLFCP HLLRAFVHVQ VETIPAKFIR RRYTMQAKSD 360 MPFDRRDRKT IGPDGVQESY RTKVLITEAM AVAKAGSKSQ DTYDEALKGL KSLRIHVESV 420 PSSFGSSIAV DQTTMQGEGE RNDLASQMSR TAPPKS

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MDPQEKNSQS TSFGARKTIT GKTRVKYCKT MDNMAMLFHC SGLDDDIVPK QNMVFKDNDS  60
VYDFYEKYAY HAGFDVRKSR TKKTIREICC SREGHHKFHK GDESERERNH RTKKTGCKAY  120
MKVKNVMVDG EVSSVCTMLL CLSIKHMRSH KHRDDTIMEF LNTMQENRVA QNNLIGVLAD  180
MHGGQENILF TSRNLENRKA ANVRAENADD INKLLEFFKE CKKDNPQFYW EAQLDEYGVL  240
KNLFWSHASC QVAYADFGDV VTFDTIYKKN IYEMPLAMFV GSNHHLQNTL FGCALLRDEK  300
ESFEWLFNTF KTCMADWPEP RCILIGLFCP HLLRAFVHVQ VETIPAKFIR RRYTMQAKSD  360
MPFDRRDRKT IGPDGVQESY RTKVLITEAM AVAKAGSKSQ DTYDEALKGL KSLRIHVESV  420
PSSFGSSIAV DQTTMQGEGE RNDLASQMSR TAPPKS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.85079	1e-31	leaf

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297727924	1e-31

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612933.1	1e-117	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_015612934.1	1e-117	protein FAR1-RELATED SEQUENCE 5 isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-36	FAR1-related sequence 5