PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037855-PA
Common NameOsI_39237
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 309aa    MW: 32319.3 Da    PI: 8.1003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037855-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.4e-15164210455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  BGIOSGA037855-PA 164 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 210
                       5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.993160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-20164219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-18164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-16165214No hitNo description
PfamPF000104.3E-13165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDDSSFFMQW AMDTLHQLPS DSTAAAYATD VAGDAFPSLQ ALRNASAAGG GGGGFRDLTV  60
QVDQVHRANS WSSSDSPGGA AATAAAGWSP HVTGGGRGHR PMSWNFSAAS AQPTTEDSGG  120
GGGGGVVPAP PQAMETETAT ARAAPVKKGG GGSSSAAAPG YVQDHIIAER RRREKINQRF  180
IELSTVIPGL KKMDKATILG DAVKYVKELQ EKVKTLEEED GGRAAAMVVR KSSCSGRQCD  240
GEGRGSRVPE MEVRVWERSV LVRVQCGNAR GLLVRLLSEV EELRLAITHT SVMPFPASTV  300
IITITAKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-15164219863Transcription factor MYC2
5gnj_B6e-15164219863Transcription factor MYC2
5gnj_E6e-15164219863Transcription factor MYC2
5gnj_F6e-15164219863Transcription factor MYC2
5gnj_G6e-15164219863Transcription factor MYC2
5gnj_I6e-15164219863Transcription factor MYC2
5gnj_M6e-15164219863Transcription factor MYC2
5gnj_N6e-15164219863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERRRRE
2169174RRRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923998e-41
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618735.11e-157transcription factor NAI1 isoform X2
TrEMBLA2ZN220.0A2ZN22_ORYSI; Uncharacterized protein
STRINGORGLA12G0170500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-31bHLH family protein