PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037776-PA
Common NameOsI_39070
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 218aa    MW: 23514.5 Da    PI: 8.2164
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037776-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.43.9e-12127102128
               NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                       ++ktLvfy+grapkg+kt+Wvmheyr+
  BGIOSGA037776-PA   1 MRKTLVFYQGRAPKGRKTEWVMHEYRM 27 
                       89***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023651.4E-4127IPR003441NAC domain
SuperFamilySSF1019415.1E-14152IPR003441NAC domain
PROSITE profilePS5100520.443152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRKTLVFYQG RAPKGRKTEW VMHEYRMEGV HDQQASSFSS KEDWFLCRVI CKRKSGGGST  60
SKSRSLTTTT TTIVHDTSTP TSSPPLPPLM DTTLAQLQAS MNTSSSAAIA AVAALEQVPC  120
FSSFSNSIAS NYNNSNSATV NAQQCYLPIV TGSNNNGMSY LDHGLPEFGS FLDTQSCDKK  180
MLKAVLSQLN SIGGEVLPGL PPPSEMAAAV SSSWMNHF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.532280.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329814870.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714640.0AK071464.1 Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620576.11e-157NAC domain-containing protein 21/22 isoform X2
TrEMBLB8BMY61e-162B8BMY6_ORYSI; Uncharacterized protein
STRINGORUFI12G20640.11e-157(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.11e-19NAC domain containing protein 1