PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037775-PA
Common NameOsI_39066
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 469aa    MW: 49575.4 Da    PI: 6.9859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037775-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.93.2e-17282328455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  BGIOSGA037775-PA 282 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 328
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.50E-19275332No hitNo description
Gene3DG3DSA:4.10.280.103.0E-21275336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-21276341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-14282328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNQFVPDWNT TSMGDGFAPL GEDDGLVELL WCNGHVVMQS QTPRKPPRPE RAAAAMAEDE  60
SASWFQYPVD DVLEKDLFTE LFGEMTAAGG VGGDARRAAC KEERGAVAAF QSRMMPPPWP  120
ARGKAEFGDV DDVCGVSEVV MAKMDGEAKV AAVAAAEAVG ESSMLTIGSS ICGSNHVQTP  180
AAGAAPPPVG NGKAGAAAAA AARRARDTAT VASSSMRSRS CAAKTEPRDV AAAGAGGKRK  240
QRGAAAMESG SPSEDVEFES AAATCSPAQK TTTAKRRRAA EVHNLSERRR RDRINEKMKA  300
LQELIPHCNK TDKASMLDEA IEYLKSLQLQ LQMMWMGGGM APRAVMFPAA GVHQYMQRMG  360
AVGMGPPHMA SLPRMPPFMA PPPAAVQSSP VVSMADPYAR CLAVDHLQPP SPMHYLQGMS  420
FYQLAAAKNL QQQQNTAEAP PPPPAGSLPP AATAQPLTPD DILHKKYGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275290RRRAAEVHNLSERRRR
2286291ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.116750.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329767810.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8297130.0CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618078.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
RefseqXP_015618079.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLB8BMY30.0B8BMY3_ORYSI; Uncharacterized protein
STRINGORGLA12G0157200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-27phytochrome interacting factor 3