PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037734-PA
Common NameOsI_38990
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 379aa    MW: 39353.5 Da    PI: 8.2263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037734-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.6e-14199246455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ahn  E+rRR +i ++f +L++l+P +    + K + a++L ++++Y+ksLq
  BGIOSGA037734-PA 199 AHNLTEKRRRFKITERFRTLQRLVPGC----DNKSNQASTLDQTIQYMKSLQ 246
                       8*************************9....89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17194254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.037195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17199252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.37E-14199250No hitNo description
PfamPF000107.0E-12199246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-13201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDRQDTEAAG SFTGDDSGQT AAIAAAAAAA VENDDLSYML RGFDYYTSSE DLFELMRQGG  60
GGACSFNQPP PLLPPAGIIV PGTTTTTLLP EQPVVDDHLP AAAAAPPSEE EMAAWLYPIV  120
GGHQVAAGGW LSPEAGDDRR AAPPAPEKKQ MDNMPAVASP TTTMNKDEAS DDSGERKKKK  180
KKASSAAGKA SRHRHAAGAH NLTEKRRRFK ITERFRTLQR LVPGCDNKSN QASTLDQTIQ  240
YMKSLQHQLE ATSAVGSPAA AVLYPAAVHP QSYMHPPAPP PPVAGAAAPV TMAPMPAGMV  300
LAAAPPGAAP PPGPPATMMP FGAMLPYPPY PAVLLPPPPA TLYGRPPAAA PSVAARRHGS  360
TSGGGRISKS SSSSLRKEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180ERKKKKK
2175181RKKKKKK
3203208EKRRRF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.698002e-97callus| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293642e-97
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.11e-147transcription factor APG
TrEMBLB8BMU70.0B8BMU7_ORYSI; Uncharacterized protein
STRINGORUFI12G19880.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-12phytochrome interacting factor 3