PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037732-PA
Common NameOsI_38988
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 271aa    MW: 29170.3 Da    PI: 8.3671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037732-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.3e-15121169355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++h+  Er+RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  BGIOSGA037732-PA 121 QTHSLTERKRRCKINENLKTLQQLVPGC----DKSNNQASTLDKTIRYMKSLQ 169
                       79*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17116179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17118176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.94E-14121173No hitNo description
PfamPF000103.0E-13121169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEMTSCYNDV DAGDIGAGGD LFDMVWPGRR RREEDNTSGC LPLSPPPPPE LAVDDQLLAG  60
GDGGGGKPVA VAVAEDDDSG ERWTEDQVPT DEGICVMGRR SESSKERRKI TRARRSSRYS  120
QTHSLTERKR RCKINENLKT LQQLVPGCDK SNNQASTLDK TIRYMKSLQQ HVQAMSVGCI  180
MKPAAAGVSY HPFLQPPPYV RPAIAAGGAA PAGMVPRPLP SSMVRFAPVL PMVVHHPAPL  240
MMMPAAPAPL MTYPGAGVAG PSNITAERKK D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-167CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8BMU50.0B8BMU5_ORYSI; Uncharacterized protein
STRINGOGLUM12G19500.11e-114(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-16phytochrome interacting factor 3-like 5