PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037731-PA
Common NameOsI_38987
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 265aa    MW: 28864.7 Da    PI: 8.2901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037731-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.7e-14156202455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h   E+rRR+riN++f  L++l+P +      K s +++L ++++Y+ksLq
  BGIOSGA037731-PA 156 THGLTEKRRRSRINEKFKMLQRLVPGC-----DKCSQSSTLDRTIHYMKSLQ 202
                       78999*********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.78E-14138206No hitNo description
SuperFamilySSF474593.66E-17150215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.186152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17155208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMSFPYSSGD LGEATTAAAA AVDMITLDQM FRDYDASTGD DLFELVWESC GGGEIDSGAG  60
EVQPAGVPCC RRLLPGSSPE PTSEDEMAAW LSTIVTGSGG GGGDDVAAGG DHQDPAVKKP  120
DGEPLTEKMD KKLPTRTEER RRVKHKARRN PGYAETHGLT EKRRRSRINE KFKMLQRLVP  180
GCDKCSQSST LDRTIHYMKS LQQQLQAMYP TMVRPAAVYP VVQPPPAFAA GGPPAASQGG  240
LHRHRRLMVV VSVHHRCRCF RLGRQ
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154894210.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080420.0AK108042.1 Oryza sativa Japonica Group cDNA clone:002-137-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLB8BMU40.0B8BMU4_ORYSI; Uncharacterized protein
TrEMBLQ2QMN20.0Q2QMN2_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGOS12T0597800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-15bHLH family protein