PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037705-PA
Common NameOsI_38944
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 743aa    MW: 84742.7 Da    PI: 8.462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037705-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-1515931498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      + + +p kfa+ + g+   s  ++le ++g++++v +   k  ++ vl++GW  F+++ +Lk+ D++vF+++g+s+f  +v++f+
  BGIOSGA037705-PA 15 DFVAVPTKFANFIRGQ--ISEVVKLEVPNGKTYDVHV--AKEHNELVLRSGWGAFARDYELKQCDILVFTYSGSSRF--KVRIFN 93
                      56789*****999777..6779***************..*********************************99999..999987 PP
2B338.71.8e-121502251798
                       E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++ k fa++  g     s   +le ++g++++v++  +k  ++ v+++GW+ F+ a +L++gD++ F ++g+s f  +v++f+
  BGIOSGA037705-PA 150 TILKMFAKNVqG-L--ISGVAKLEVPDGKTYDVEI--SKEHNELVFRSGWEVFAIAYELEQGDILAFGYSGNSHF--KVQIFN 225
                       678889977744.4..34579**************..**********************************9999..999987 PP
3B356.55.2e-18282373199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv+++ +  k   l +pkkfa++  gk   + +++le ++g+ ++v++  +  +++ vl++GW++F +  +Lk gD +vF ++g+s f  +
  BGIOSGA037705-PA 282 FFKVMMSVSDIKDE-LAIPKKFAANVRGK--IPEQVRLEVSDGKMYNVQV--TEEQDELVLRSGWENFSSTYQLKHGDLLVFIHSGHSHF--K 367
                       99***999999987.********888666..3446***************..********************************999999..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v +f+ 
  BGIOSGA037705-PA 368 VLIFDP 373
                       999885 PP
4B336.96.6e-12497579992
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                        + +sg lv+ k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ +++ ++  l
  BGIOSGA037705-PA 497 TSVASGSLVFCKNYAVRYLLD--QNRTIKLCQSGGsQTWDISL--DMDTDDlYALSTGWLDFFRGNLLQEGDICVFEASKSkRGVAL 579
                       4556778***********888..4558888887777*******..8888888*************************8876444444 PP
5B340.54.8e-13641739199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                       f++v+ +s+ ++++ l+++ k+a+++   k +   ++l+  e+  + +  l ++ + + + l kGW +Fv++n+L+  D+++F+l+++ ++ +
  BGIOSGA037705-PA 641 FLSVMRSSNCTRQSSLCFSVKYASKYLPHKDQ--NMRLRLpETKYKCKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNkKKLT 731
                       7889999999999*************544345..5666663455778888877999999***************************999**** PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                       ++++++rk
  BGIOSGA037705-PA 732 MTIHIIRK 739
                       *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.265295IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-20397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-18597IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.5E-7895IPR003340B3 DNA binding domain
CDDcd100172.17E-191093No hitNo description
PfamPF023622.0E-121493IPR003340B3 DNA binding domain
CDDcd100178.33E-15126225No hitNo description
Gene3DG3DSA:2.40.330.102.9E-16127229IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-6133227IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292134227IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-16150229IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-10150225IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-21275375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-22277375IPR015300DNA-binding pseudobarrel domain
CDDcd100179.18E-18280372No hitNo description
PROSITE profilePS5086312.844281374IPR003340B3 DNA binding domain
PfamPF023623.4E-15282372IPR003340B3 DNA binding domain
SMARTSM010192.0E-11282374IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-14482586IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-15483587IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-11488585No hitNo description
PROSITE profilePS5086310.588489587IPR003340B3 DNA binding domain
SMARTSM010190.0013491587IPR003340B3 DNA binding domain
PfamPF023621.8E-9497579IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16633739IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-18634742IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-14639735No hitNo description
PROSITE profilePS508639.164641740IPR003340B3 DNA binding domain
PfamPF023623.5E-12641739IPR003340B3 DNA binding domain
SMARTSM010191.1E-5641740IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MGDQKRSFIN VMIGDFVAVP TKFANFIRGQ ISEVVKLEVP NGKTYDVHVA KEHNELVLRS  60
GWGAFARDYE LKQCDILVFT YSGSSRFKVR IFNPSGCEKE LSCVMMNNTP CGHEGSMSYH  120
DNHLQSPSES SSFFNISLPP HSPFQELSGT ILKMFAKNVQ GLISGVAKLE VPDGKTYDVE  180
ISKEHNELVF RSGWEVFAIA YELEQGDILA FGYSGNSHFK VQIFNPSNCE KELSCVVMNR  240
SISDDNHRQS PRRERMNKPS TTCMDCITNH YWLHMDDRER YFFKVMMSVS DIKDELAIPK  300
KFAANVRGKI PEQVRLEVSD GKMYNVQVTE EQDELVLRSG WENFSSTYQL KHGDLLVFIH  360
SGHSHFKVLI FDPSCTEKEF SCVVTDNTSH VHERSISHDN HLQSPRSEIL GKNYSLCSSR  420
KRSRMNPADY PSQRPDVPSS EDIKDPMSSG GLQKSKKSCY VLPMLYNMTS AQEAEVLALE  480
KKIQPQIPLY ITAMDKTSVA SGSLVFCKNY AVRYLLDQNR TIKLCQSGGS QTWDISLDMD  540
TDDLYALSTG WLDFFRGNLL QEGDICVFEA SKSKRGVALT FHPFKESHCP KSSEYTLSTK  600
SPTRRVPKRD YFATNLTNLT DQQERKVKNK IKSIQSDIPI FLSVMRSSNC TRQSSLCFSV  660
KYASKYLPHK DQNMRLRLPE TKYKCKAALH IDTSTNLHKL LKGWGKFVND NKLEIHDICL  720
FQLMKNKKKL TMTIHIIRKG ECS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.700790.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293460.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2QMT70.0Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLB8BMS80.0B8BMS8_ORYSI; Uncharacterized protein
STRINGOBART12G17530.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-20B3 family protein