PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA037038-PA
Common NameOsI_37569
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 562aa    MW: 61542.7 Da    PI: 4.3902
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA037038-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS163.81.4e-501755593373
              GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                       +lLl+ A av++gd+  a+a+++rl +l a  +g+       p+  la yf+++L+ r+++      +a p+s+ ++     +  a+++++e+
  BGIOSGA037038-PA 175 DLLLAGAMAVDAGDAVHASAIMSRLDDLlADIAGRrsceatsPVDHLAYYFARGLKLRISG------AATPASSPPPPAANWSSPAYRMLQEL 261
                       689999*******************998766666456666679******************......3344444444445667789******* PP

              GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa....sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                       +P++kf+h+taNqaIlea++ +  vH++Df++++G+QW +L+  La     R+++p  + +T v   +   + ++   ++ L++fAe+l++pf
  BGIOSGA037038-PA 262 TPFVKFAHFTANQAILEATADDLDVHVVDFNVGEGVQWSSLMSDLAaagrHRSSKPLLFHLTDVIT-SGAGTPRTADARRWLSEFAESLHLPF 353
                       *********************************************96543355777799***9999.4458999999999************* PP

              GRAS 177 efnvlvakrledl..eleeLrvkp....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh.nse.......... 251
                       +++ l++++ +d     +eL++         ++  +     ++   +++l+s  +  +L ++  l+Pk+v+++e e+++ +++          
  BGIOSGA037038-PA 354 RYTSLHVHDGDDDdeLHHELAMICngssSPPVILTCDDTTTTT---NTPLRSwLKLLLLGTITILQPKLVILIEDELSRiSKNppspslaapp 443
                       *****77765554112233433222322333444443333222...3444443577899*****************999554489******** PP

              GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                       +F e f++a+ +++a+++s+++ l + ++e ++++ + +g+e   vv  + ++ + r  +l+   +++e  G+++ ++s + ++q k+l   +
  BGIOSGA037038-PA 444 PFPEFFSDAVAHFTAVMESTASCLVSYDDE-AWLSLRRVGEE---VVGPRVEDAVGRYGSLAGGAQMME--GLRAREVSGFSVAQGKMLAGLF 530
                       ********************8776554433.33332223433...344555555556666677778876..********************** PP

              GRAS 345 ksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                       +  g+ v  +e+g l l+Wk+rpL+svS W
  BGIOSGA037038-PA 531 G-GGFGVVhQEKGRLALCWKSRPLISVSLW 559
                       *.67876638899999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.741147540IPR005202Transcription factor GRAS
PfamPF035145.0E-48175559IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
METMSYPCSL LIPFSTQFEE ISSSSLLLWS PQAEENPHEN ANMYEFDADH SHDQIHQDQQ  60
FLDMMVIQES ANEFDGNHSH DQIHQDHEFL ETMVIQESAN EFDGDHSHDQ IHQDHEFLEM  120
MAIQESANDL LQLQDDFSVP NADPLAASFE FDERLAVAGH ENGNVVAAQE ESAGDLLLAG  180
AMAVDAGDAV HASAIMSRLD DLLADIAGRR SCEATSPVDH LAYYFARGLK LRISGAATPA  240
SSPPPPAANW SSPAYRMLQE LTPFVKFAHF TANQAILEAT ADDLDVHVVD FNVGEGVQWS  300
SLMSDLAAAG RHRSSKPLLF HLTDVITSGA GTPRTADARR WLSEFAESLH LPFRYTSLHV  360
HDGDDDDELH HELAMICNGS SSPPVILTCD DTTTTTNTPL RSWLKLLLLG TITILQPKLV  420
ILIEDELSRI SKNPPSPSLA APPPFPEFFS DAVAHFTAVM ESTASCLVSY DDEAWLSLRR  480
VGEEVVGPRV EDAVGRYGSL AGGAQMMEGL RAREVSGFSV AQGKMLAGLF GGGFGVVHQE  540
KGRLALCWKS RPLISVSLWC PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2120455924374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809511.11e-142nodulation-signaling pathway 2 protein-like isoform X2
TrEMBLA2ZIC50.0A2ZIC5_ORYSI; Uncharacterized protein
STRINGOGLUM12G04490.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171141111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-15GRAS family protein