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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA036955-PA | ||||||||
Common Name | OsI_37398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 22574.6 Da PI: 8.8704 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.4 | 6.7e-24 | 10 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 GfrF+P+ e+l+++yL + ++gk+++ +e i ++d+y +eP+dL k + e+ +fF++ ++++ ++++k+r++ +g+W + BGIOSGA036955-PA 10 SLGFRFNPSAEDLITFYLPRLIAGKPMKDTEKfICRADVYGSEPSDLAgKfapvpR--CEKGGRFFFTSCKRHKGSSTKKERTAGAGTWVRQN 100 57************************7775555**************843454222..255588**************************886 PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kev++k g +vg + + f ++g+ tdW+m+e + BGIOSGA036955-PA 101 S-KEVKNKAGVKVGETQNFRFK----KDGSYTDWLMEEHHC 136 5.999999*************7....78999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-25 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.124 | 9 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-13 | 12 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEKHVEKMLS LGFRFNPSAE DLITFYLPRL IAGKPMKDTE KFICRADVYG SEPSDLAGKF 60 APVPRCEKGG RFFFTSCKRH KGSSTKKERT AGAGTWVRQN SKEVKNKAGV KVGETQNFRF 120 KKDGSYTDWL MEEHHCCRQQ AVAGDEEPVI CRMYVSPRAP PDSAARQESA AFVQQQPAPQ 180 VSEPPCDKKK RDDVAEEAPA AA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000502 | 0.0 | BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000504 | 0.0 | BX000504.2 Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619129.1 | 1e-150 | NAC domain-containing protein 41 | ||||
TrEMBL | A0A0E0RDG6 | 1e-145 | A0A0E0RDG6_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0Y6T1 | 1e-149 | A0A0P0Y6T1_ORYSJ; Os12g0135850 protein | ||||
TrEMBL | B8BLY5 | 1e-149 | B8BLY5_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI12G02480.1 | 1e-146 | (Oryza rufipogon) | ||||
STRING | OS12T0135850-00 | 1e-149 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04400.1 | 6e-14 | NAC domain containing protein 77 |