PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036920-PA
Common NameOsI_37306
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 386aa    MW: 43016.1 Da    PI: 6.6422
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036920-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.2e-5241311128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+v+yL +++++ k+++  +i+ev+iyk++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++l
  BGIOSGA036920-PA   4 LPPGFRFHPTDEELIVHYLMNQAASIKCPV-PIIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSIL 95 
                       79****************************.88***************8777899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl
  BGIOSGA036920-PA  96 STpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 131
                       9988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-642165IPR003441NAC domain
PROSITE profilePS5100559.0634165IPR003441NAC domain
PfamPF023652.4E-265131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MPALPPGFRF HPTDEELIVH YLMNQAASIK CPVPIIAEVN IYKCNPWDLP GKALFGENEW  60
YFFSPRDRKY PNGARPNRAA GSGYWKATGT DKSILSTPTS DNIGVKKALV FYKGKPPKGV  120
KTDWIMHEYR LTGTSANNTT TTKQRRASSM TMRLDDWVLC RIHKKSNDFN SSEQHDQEPE  180
GSTVDEQLED IHDNNSSSQQ PPAPPDMNNQ QSDFQPMTAM SMSKSCSLTD LLNNLDCAAL  240
SQFLLDGSSD AIAELPAPPS PLIYPNQTLN YNINNNMPHA FESRLDHHDG YVNNYNVNGL  300
RRKRMMACSA TSFDDGSSSS SSDFLHVAKK PLLLPSDSRG SGFGGGYCNQ QLSETATGFQ  360
FQNGNMLSHP FPLNQQLLLN NHLQMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-73417115174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.796310.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976125700.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004950.0BX000495.1 Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620532.10.0NAC transcription factor 29
TrEMBLA2ZHM40.0A2ZHM4_ORYSI; Uncharacterized protein
STRINGOBART12G01290.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.15e-81NAC domain containing protein 47