PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA036857-PA

Common Name

OsI_37170

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 158aa MW: 17549 Da PI: 6.931

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA036857-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.6	5.1e-44	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lq+q++ql+ + BGIOSGA036857-PA 11 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMQ 103 7****************************************************************************************** PP DUF260 94 lallkee 100 lal+++e BGIOSGA036857-PA 104 LALAHAE 110 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.68	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MAGSGSGSGT PCASCKLLRR RCTSECVFAP YFPAEEAQRF AMVHRVFGAS NVSKMLLDVP 60 PPQRPDAVSS LVYEANARMR DPVYGCVAAI SFLQNQVSQL QMQLALAHAE TAALQLQLQQ 120 QHQDQDDHHH QQCILENAAA HHQLMLQEAF LKKESMWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-47	2	110	2	110	LOB family transfactor Ramosa2.1
5ly0_B	5e-47	2	110	2	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.79656	0.0	leaf

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	117234884	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT828113	0.0	CT828113.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI020B08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618081.1	1e-112	LOB domain-containing protein 12
Refseq	XP_015618082.1	1e-112	LOB domain-containing protein 12
Refseq	XP_015618083.1	1e-112	LOB domain-containing protein 12
Refseq	XP_025877106.1	1e-112	LOB domain-containing protein 12
Refseq	XP_025877964.1	1e-112	LOB domain-containing protein 12
Swissprot	Q8LBW3	4e-55	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A2ZHA4	1e-113	A2ZHA4_ORYSI; Uncharacterized protein
TrEMBL	I1QX16	1e-113	I1QX16_ORYGL; Uncharacterized protein
STRING	ORGLA11G0005800.1	1e-114	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-50	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]