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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA036825-PA | ||||||||
Common Name | OsI_37112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 191aa MW: 21493.5 Da PI: 8.9267 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94 | 1.1e-29 | 32 | 86 | 5 | 60 |
S-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 5 ynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve + d+++ ei+Y+geHnh+k BGIOSGA036825-PA 32 WCWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 86 89************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 6.54E-22 | 31 | 87 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.9E-25 | 31 | 87 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-22 | 32 | 85 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-28 | 32 | 86 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.62 | 32 | 87 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAPLKPGIGG GWWANVASED KEEQVIRKWG RWCWRKYGQK QVKGSEFPRS YYKCTHPTCP 60 VKRKVEMTPD GRIAEIVYNG EHNHPKPHPP RKPTLSTSVE TLVATNDAGL ENKLEGCDQA 120 IGSDAVVEAL RGGCHCLDGF RNGNEISDCK KRLFRFGVRF HDGSCKRILA QPHNIINLGS 180 HLVAEYVQEK Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-14 | 32 | 87 | 18 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50258 | 0.0 | flower| panicle| root| stem | ||||
Os.90722 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519207 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX072548 | 0.0 | BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619786.1 | 5e-83 | uncharacterized protein LOC4351243 | ||||
TrEMBL | B8BLR4 | 1e-141 | B8BLR4_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA12G00200.1 | 1e-113 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 3e-24 | WRKY DNA-binding protein 3 |