PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

G2-like

Protein Properties

Length: 313aa MW: 34511 Da PI: 7.8802

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA036807-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.9	7e-31	57	110	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ BGIOSGA036807-PA 57 PRLRWTPELHLSFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 110 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.92	53	113	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-29	53	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-15	54	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	56	112	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	58	109	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEKTSAGKEE GSESKTAAAN NDGSSTSSTT EEEESGESQR RTSSSSSVRP YIRSKNPRLR 60 WTPELHLSFV RAVDRLGGQD RATPKLVLQL MNVRGLSIGH VKSHLQMYRS KKIDESGQVI 120 GGGSWRSSDE QQYHHLQMQG GGDGGQAYNL GHLSLPAALH HRHITAGSGT ILQSRVANAW 180 SPWRCHGSYW LRAGHHLLVG SKPYYHPPPA EARANTSSNH PDFVQGSSSS PDDHTMNHQR 240 PVVLKEMIYN EGSNHQGGPL NLDLSLDICP RGEKRKREFS WRKHEEDHDH TTIAIGGDQE 300 AESCATGLSL SLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-18	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-18	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-18	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-18	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-18	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-18	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-18	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-18	58	112	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.18448	0.0	callus\| leaf\| panicle\| root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32992506	0.0

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107297	0.0	AK107297.1 Oryza sativa Japonica Group cDNA clone:002-126-C05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620339.1	0.0	probable transcription factor RL9
TrEMBL	A0A0E0J5T4	0.0	A0A0E0J5T4_ORYNI; Uncharacterized protein
TrEMBL	A2ZH84	0.0	A2ZH84_ORYSI; Uncharacterized protein
STRING	ONIVA12G00410.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-38	G2-like family protein