PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036688-PA
Common NameOsI_37365
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 743aa    MW: 85914.6 Da    PI: 7.6017
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036688-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.35.4e-2336125190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+ +Y+ ++GF+vr+++++ks+ ++ +t+++fvCs++g+r+eekk  + ++r+ra+trtgC+ ++ +++ + + +++v++l  eHnH l+
  BGIOSGA036688-PA  36 DFWVKYGGRIGFDVRNNYTNKSDLDQLVTSSRFVCSNQGSRAEEKKY-VVAKRNRAHTRTGCQVCMGITLLReTMTYKVHDLAVEHNHLLQ 125
                       69********************************************9.999******************98889**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1536125IPR004330FAR1 DNA binding domain
PfamPF105514.8E-27247341IPR018289MULE transposase domain
PROSITE profilePS509669.78528564IPR007527Zinc finger, SWIM-type
SMARTSM005758.8E-5539566IPR006564Zinc finger, PMZ-type
PfamPF044347.7E-5540562IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MTVEKAMEQN LERSTKPPCW MPQIGMTFNS YEEAWDFWVK YGGRIGFDVR NNYTNKSDLD  60
QLVTSSRFVC SNQGSRAEEK KYVVAKRNRA HTRTGCQVCM GITLLRETMT YKVHDLAVEH  120
NHLLQTLQTS HLMPSQRNIS KHQAVEIEVA YDSGIKPKAA HEFLGRHVGG SANLGYTQRD  180
HKNYLRSRRQ RDLLYGEAGS LLKYFQDKIV ENPSFHYAVQ LDCEEQIANI FWADARMIAD  240
YAHFGDVITF DTTFGTNKES RPFGMFVGFN HFRETVVFGA ALMYDETFES FKWLFNTFLS  300
AHNQKQPQTI FTDQDIAMGK AVSEVFTGAW HGLCTWHISQ NAVKHLSPQQ TEGSSILADF  360
SACMYEYEEK EEFEDVFDAM RQKVRKVTWL DSIYNLKEKW AECYMSDVFT IGMRSPQLSE  420
SLNSNLKGHL KSDLDIGRFL NRVERVVEEK REKELQSEYE SRKNLPRIMM MTPMLVQASK  480
LYTPALFEVF QAEYEKSMAA YTKGSNGSND FIIAIGSLDD QFILEDEHKV TANPFDQTVS  540
CSCRLFERIG LLCRHALKAL DLVNIKLLPE KYVLKRWTRE AKCGAIQDMH GRQIVEDPKL  600
STTLRYRYLY QQFLPLASRA ADFEECYLLV EEALHAVSKK VEDKIKQTYS DGIAKSNDQS  660
TSQLAQNLAH VSGLKKKESR KRVTKRKTNW IDKLQKTKKR KPEEKAEEEN LQTDVEEHQE  720
CEAISSYAQL LLVTVFRRVR THS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1684698KRKTNWIDKLQKTKK
2684700KRKTNWIDKLQKTKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619119.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8BLW50.0B8BLW5_ORYSI; Uncharacterized protein
STRINGSb03g010890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5