PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036589-PA
Common NameOsI_37556
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 654aa    MW: 66835.9 Da    PI: 6.1489
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036589-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-093734101954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  BGIOSGA036589-PA 373 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 410
                       554459******************************88 PP
2BELL115.13.6e-37222293172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       erqelq+kk+kLl++l+eV++rY+qy+ q+q v+++Fea+ag gsa+ YtslAl++iSr+FrcL+daia q+
  BGIOSGA036589-PA 222 ERQELQMKKSKLLNMLDEVEQRYRQYHRQMQGVAAAFEAAAGAGSATTYTSLALRTISRQFRCLRDAIAAQV 293
                       79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-56154291IPR006563POX domain
PfamPF075268.2E-48159290IPR006563POX domain
PROSITE profilePS5007111.904351414IPR001356Homeobox domain
SMARTSM003897.8E-10354418IPR001356Homeobox domain
CDDcd000865.97E-13354415No hitNo description
SuperFamilySSF466893.72E-17355421IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28357420IPR009057Homeodomain-like
PfamPF059204.4E-18371410IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAAYFTGGGA GTDVVQAAGT DGLQTLYLMN PSYVGFTDAA AAPGGGAAAA NMVFLNSAVS  60
TLTPASFGHH HQPTPAAQHF VGIPLQSGYN LWGPDATGGN DVSPPRHGAQ QQAPAAAGTS  120
AAAVSPVLSL SSREAAPPVT VAAAAAAAAV PGGTDQEKVV MRSRYLKAAQ ELLDEAVSVS  180
KGAATAVKKK EDSEGGVSGG GGGAEDGGGS KSGAAAEMST AERQELQMKK SKLLNMLDEV  240
EQRYRQYHRQ MQGVAAAFEA AAGAGSATTY TSLALRTISR QFRCLRDAIA AQVRAASRGL  300
GEDCGDDEGG GGGGRTTVGS RLRFIDHQLR QQRAMQQLGM VHAAAAGGAA GGGWRPQRGL  360
PERAVSVLRA WLFEHFLHPY PKDSDKVMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY  420
AEETKAKEEE EEEHDAAAAA AGDRCGVAEQ APSKPDDSAG IGMSSSSPAA AASRSVGVHA  480
GDQHAQASFY GGGGGGDDPF QCRIKKARTT TADEPAAAAA FHVSGEAAVS HRELLMKFTE  540
AGGEGVRTDH PHVNDDDDDV PGGAGGYSLF TAAQYGHQFG SDHFAFAGHG GGGGGGVSLT  600
LGLPHGADQT PASFLIGAGA GSDGGGAPVT TAGYDMNMQS TKSLAAQLMR DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-17360418563Homeobox protein Meis2
3k2a_B2e-17360418563Homeobox protein Meis2
4xrm_A1e-17360418563Homeobox protein Meis2
4xrm_B1e-17360418563Homeobox protein Meis2
5bng_A1e-17360418159Homeobox protein Meis2
5bng_B1e-17360418159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.274230.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379904360.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1208440.0AK120844.1 Oryza sativa Japonica Group cDNA clone:J023022M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619926.20.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 1
TrEMBLA2ZIB20.0A2ZIB2_ORYSI; Uncharacterized protein
STRINGOGLUM12G04370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-80BEL1-like homeodomain 1