PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036435-PA
Common NameOsI_37851
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 731aa    MW: 82982.4 Da    PI: 5.6988
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036435-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1773.8e-2499189289
              FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       fYneYA+ +GF  r+ +s++s  +++ +++++fvCs+eg +++++ +   + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l
  BGIOSGA036435-PA  99 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 189
                       9*******************944567789***********9999888787888999***************999.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-2199189IPR004330FAR1 DNA binding domain
PfamPF105516.3E-28282373IPR018289MULE transposase domain
PROSITE profilePS5096610.979562598IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-8565595IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDDAAA AAAAAAEQDV  60
MRDFAPGDGD GDGDADAEND PKEPVLGMTF ESDEAAKMFY NEYARWLGFP FRVGRSRRSK  120
GMEEVVIMKR FVCSREGAHK KKQPSTSGEA TSKRERASMR EGCNAMMEVV RDKDHWVVSK  180
LEKAHNHSLG IGTRYGYLRA RGLPDVSNKI AAMGSDGTAS LRQNFLGETG DGQGLLDYLK  240
KKQANDPRCS HAIQVDKNGC LMNVFWADSR AKEAYRHFGD AVTFDTSYKK TKYMMPFVTF  300
SGVNHHLQTV IFGCAFLMEE TESSFSWLFE TWLAAMGGKA PGSLVTDQNR AMKAAIGKVF  360
PDTCHRFCKW YILSRTKQKL GHAYSEHPDL RDEIESCVIE SETISTFETS WMSILEKYDL  420
RKHAWLQAIY NIRQKWVPLY MMGTFFAEIS PTQKLETMND FYKKYFNTKT TLEVFLNQFD  480
STMTSRYENE AQADIDTRLN EATTRTASPI EKQAASTYTK AVFSRFQEEF TESLGYIIQK  540
TEEGRVSKFS ITKDEDDPSD TFCVTYNASS KMAKCSCKYF KFSGILCRHI LGVFIIVDPR  600
TLPPDYFLKR WTRNARHDEL LEDNSNNHKD ATCQSITSRY NVLCADAIRC ADKGSASKAV  660
YKAAKDILQK AYEEIIAYER NPGRGLQRDA ININEDITID DTMNDQSLPD FWTKDYIKGI  720
WHQKCKEPKI F
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.505620.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379914760.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620344.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA2ZJ470.0A2ZJ47_ORYSI; Uncharacterized protein
STRINGOS12T0225300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-146FAR1-related sequence 5