PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035917-PA
Common NameOsI_38930
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 304aa    MW: 32970.3 Da    PI: 4.644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035917-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-112322721055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  BGIOSGA035917-PA 232 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 272
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14224288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13227285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.19E-13231276No hitNo description
PfamPF000102.1E-8232272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGGGLIADM SWTVFDLPSH SDESEMMAQL FSAFPIHGEE EGHEQLPWFD QSSNPCYYSC  60
NASSTAYSNS NASSIPAPSE YEGYCFSDSN EALGVSSSIA PHDLSMVQVQ GATEFLNVIP  120
NHSLDSFGNG ELGHEDLDSV SGTNKRKQSA EGEFDGQTRG SKCARKAEPK RAKKAKQTVE  180
KDASVAIPNG SCSISDNDSS SSQEVADAGA TSKGKSRAGR GAATDPQSLY ARKRRERINE  240
RLKTLQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DEMWMYAPIA YNGMNIGLDL  300
NIDT
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154541321e-70
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619496.10.0transcription factor bHLH85
SwissprotQ84WK06e-51BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A0E0JBT20.0A0A0E0JBT2_ORYNI; Uncharacterized protein
TrEMBLA2ZM740.0A2ZM74_ORYSI; Uncharacterized protein
TrEMBLQ2QMV90.0Q2QMV9_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGOS12T0589000-000.0(Oryza sativa)
STRINGONIVA12G15960.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]