PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA035911-PA

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

Dof

Protein Properties

Length: 272aa MW: 28251 Da PI: 10.7933

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA035911-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.7	7.1e-35	47	101	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG+lrnvP+Gg++rk+ + BGIOSGA035911-PA 47 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 101 68**************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.4E-30	47	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.512	47	101	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-20	49	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEAPLHQSPV PLLPPPRVVG VQQQQQQEAV VPPPPAMAAA AGGGGREQCP RCASRDTKFC 60 YYNNYNTAQP RHFCRACRRY WTLGGSLRNV PIGGSTRKRP RPSRPARAAV AAASPPPPRR 120 ARAAPXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA AASGGGGGGG LLVSLLGAAP 180 VLEGRLGGGI GVDLLGGEQL GFGAMAMPPA PLLWPARVLE GGDAWKSAAA AAGVSYFPFP 240 ALWQELAAAA PVELAGGGGL LRHGGGGAPQ LM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	101	KRPRP

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37989426	7e-78

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-23	DOF zinc finger protein 1