PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035895-PA
Common NameOsI_38986
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 515aa    MW: 54959.6 Da    PI: 9.8763
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035895-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31449506359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  BGIOSGA035895-PA 449 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 506
                       9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.1E-18400445IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-33435506IPR003657WRKY domain
PROSITE profilePS5081130.148442505IPR003657WRKY domain
SuperFamilySSF1182909.15E-27445506IPR003657WRKY domain
SMARTSM007744.4E-38447507IPR003657WRKY domain
PfamPF031068.3E-27449505IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MSRSPARRPA QVSELAELEL LLFFFFFFFF FSGDEFDAFL DGRPVAAMGR GAPLVVAAAT  60
MGRRSGRRNQ GRPPSIAVGF DGWLLDEREA LAPPPPGFPV EFPAFFFVGG CFMEICVTCL  120
LLRVLCFSRS EELRESEASL AGLAPAAAAA AAMEEEVEAA NRAAVESCHR VLALLSQQQD  180
PALLRSIASE TGEACAKFRK VVSLLGNGGG GGGGGGGGGH ARGRMAGRSR PSAVLREKGF  240
LESSSGGGQL GMMMSGAATP STSSAAHLRN RIGGGSGVPP DSLRGLDLVS SSSKGGAHQF  300
DPPKLVQPLS VQFQFGATAH RYPFQQHQHQ QKLQAEMFKR SNSGISLKFD SPSATGTMSS  360
AFMSSLSMDG SVASLEGKPP FHLISGPVAS DPVNAHHVPK RRCTGRGEDG SGKCATTGRC  420
HCSKRRKLRI KRSIKVPAIS NKIADIPPDE YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP  480
ARKHVERCVD DPAMLIVTYE GEHNHTRLPT QSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21440509775WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.190130.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329806720.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620342.10.0protein WRKY1
SwissprotQ32SG41e-88WRKY1_MAIZE; Protein WRKY1
TrEMBLB8BMU30.0B8BMU3_ORYSI; Uncharacterized protein
STRINGOGLUM12G19470.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-70WRKY DNA-binding protein 21