PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035677-PA
Common NameOsI_36961
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 1176aa    MW: 132745 Da    PI: 6.4649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035677-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.22.5e-21922983259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST....T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa....gCpvkkkversaedpkvveitYegeHnhe 59 
                       dDg +W KY qKe+ g++fpr+Y+rCt+     gC+++k+v+r++ dp +++i+Y+geH + 
  BGIOSGA035677-PA 922 DDGLSWSKYEQKEILGAKFPRAYFRCTHWntkkGCMATKEVQRDDGDPLMFDIVYHGEHSCA 983
                       8**************************9767779*************************996 PP
2WRKY741.9e-2310211080259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                        dDgy+WrKYGqK+v g  + r+YYrC+++   gC++kk+v+r + d+ ++++tY geH++ 
  BGIOSGA035677-PA 1021 DDGYSWRKYGQKNVLGFSYLRGYYRCAHRntkGCQAKKQVQRHD-DGLLFDVTYLGEHTCA 1080
                        8***************************98889**********9.*************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.104.1E-202266IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520472.08E-523136No hitNo description
PfamPF009312.2E-34199466IPR002182NB-ARC
SuperFamilySSF525404.16E-28253440IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520582.38E-17489787IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.1E-20543739IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF1182905.89E-20914984IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-21915984IPR003657WRKY domain
PROSITE profilePS5081119.061916981IPR003657WRKY domain
SMARTSM007749.6E-31921984IPR003657WRKY domain
PfamPF031068.3E-21922982IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-2410081080IPR003657WRKY domain
SuperFamilySSF1182908.63E-2210141080IPR003657WRKY domain
SMARTSM007743.4E-3610201081IPR003657WRKY domain
PROSITE profilePS5081118.64710211077IPR003657WRKY domain
PfamPF031065.9E-2310211079IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1176 aa     Download sequence    Send to blast
MSSPPALVER LELLPRICIF SYLPKWISLL SKLRILKIGV RELVRNDIDV LMGLRALTDL  60
SLHVHTKPTE IIFFGGIGFK ALKYLKINCC VAWLKFDMDA MPSLYKLKLG YNVDGVDQER  120
TIPDGIQDLY GLKEISVKIG GADPEKYDRR AEELAFMIDS GLHDRCVSVT LQFVRQIFDF  180
NEDKSSLTQE EQRKLKQQEI LEDDSDEEYD EIIQDSGEQE VKQSALSEWD IVHLLRNKLD  240
NQQDGTTCHF PVVASYYVDT CQLTALATIR PHLAKDIPAI KGFLIVIDDL WATSTWDIIK  300
CALPEGNKSS RILTTTEIED LALQSCSYDL KFIFKMIPFG EDDSRKLLFS IVFGSHSKCP  360
PEVSETLYDI VRKCGGLPLA IVTVASLLAS QLDKLEQWDY INKSLGYSLM ANPTLEGMKQ  420
LLNLCYSNLP QHLKACMLYL SMYQGDHIIW KDDLVNQWIA EGFICATEEH DKEEISRGYF  480
DELVGRKIIQ PVHIDDSGEV LSCVVHHIVL NFVTYKSIEE NFIIAIDHSQ ATIRFADKDS  540
TGIVDLTKIS ELVRLRYLKV TSNATVKLPT RLQGLQYLET LKIDGKISEV PSDIIHLPGL  600
LHLTLPAKTN LPTGISHVTS LRTIGYFDLS CNSVENLWRL GELTNLWDLQ LTYSEIHSDN  660
LKNNMKYLGP ILGKLRNLKS ITLSADGSSC PDTLHIDRDT KTRINLGNLC ILKIGIREVT  720
SNNIDVLGVL PELTVLSLYV HTKPAERIVF DNAGFSILRY FKFICSVAWM KFEVGAMPSL  780
RKLKLGFDVH RADQHDIIPV GIEHLSGLEE ISAKIRVAST AHDHCRRFAE SALTNAIRMH  840
PGRPSVNIRC VDWTFDGMDV SNAGTREEEC RILKKQQNIV KESSTEKSAV LEKDRGDGAN  900
KSDESREKLP MEMWHVRSNT EDDGLSWSKY EQKEILGAKF PRAYFRCTHW NTKKGCMATK  960
EVQRDDGDPL MFDIVYHGEH SCAQTAESNV DEQIRLTRTL DKKVKRMKRK RQVRVTSVPA  1020
DDGYSWRKYG QKNVLGFSYL RGYYRCAHRN TKGCQAKKQV QRHDDGLLFD VTYLGEHTCA  1080
DQPQAAHSSD QVQVTLWPPA VSPEQPLTPQ SGLEQSSTVT SVKTTDTAWT EKMLPPGPTL  1140
GQGDGTGPLA AEGPQLYASS IHSHKNSQAN NAITDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6s2p_N2e-32283520115347NRC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110041010KRMKRKR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976124040.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1356440.0AC135644.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085H07, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616919.10.0disease resistance protein RGA5-like isoform X2
TrEMBLA2ZGQ40.0A2ZGQ4_ORYSI; Uncharacterized protein
STRINGONIVA03G01340.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-22WRKY family protein