PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035330-PA
Common NameOsI_36239
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 265aa    MW: 28892.9 Da    PI: 5.9029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035330-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.58.6e-131864148
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                      l pGfrF+Ptd+elv +yL +++ + +l++  +i++vdi++++Pwd+ 
  BGIOSGA035330-PA 18 LLPGFRFRPTDDELVIKYLYPRAFHVPLPC-AIITDVDIHHHKPWDIV 64
                      579***************************.88*************94 PP
2NAM31.55e-107111391128
               NAM  91 evlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ k     ++ lvg+++tLvf+ g+++++e+t+W mhe++l
  BGIOSGA035330-PA  71 PIYYKpegaaNDMLVGMRRTLVFHYGKSRSAERTEWAMHEFQL 113
                       55555544446677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-2612120IPR003441NAC domain
PROSITE profilePS5100513.25918182IPR003441NAC domain
PfamPF023653.3E-1220113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MANTGLSIPM VNGATIHLLP GFRFRPTDDE LVIKYLYPRA FHVPLPCAII TDVDIHHHKP  60
WDIVPAGSEV PIYYKPEGAA NDMLVGMRRT LVFHYGKSRS AERTEWAMHE FQLAGAGLLP  120
HPMMRHATSN GSEPPCGCLE ATIAKKSDGL SATLRAKRDS APLMRIMVEP DSSWVICCIY  180
KKRQRAPPVV IPPVIGDVGE AIIPHAIGDA REGQLHFIDF LGQPARNDPS SPHSCTIDPS  240
SLEEGSDESA GDGEDKDGDG MNEAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-131411311140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.876990.0callus| flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2139591380.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1073690.0AK107369.1 Oryza sativa Japonica Group cDNA clone:002-127-B02, full insert sequence.
GenBankEU8470000.0EU847000.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.10.0NAC transcription factor 25
TrEMBLB8BKP70.0B8BKP7_ORYSI; Uncharacterized protein
STRINGONIVA11G14120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-19NAC domain containing protein 41