PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035329-PA
Common NameOsI_36238
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 282aa    MW: 31048.4 Da    PI: 8.1657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035329-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.94.9e-33181481128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lp+G+ F+Pt+ elvv+yL +++ +++l++ ++i++vdi  ++Pwd+   + ++++  +fF+++++++++++++n a+ +g+W+  g++ +++
  BGIOSGA035329-PA  18 LPVGCVFRPTEGELVVNYLYRRAMQEPLPC-DFITDVDIQCHNPWDIV-PAGEKKNGKHFFTRKENSHPRDHKSNHAAGDGFWRLAGTEVPIY 108
                       799***************************.99**************5.455667899*********************************** PP

               NAM  94 sk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +k     +++lvg+k+tLvf+  ++++ e+t Wvm+e+rl
  BGIOSGA035329-PA 109 NKpsggaDEKLVGMKRTLVFHFRKSSSIERTGWVMQEFRL 148
                       **999988889**********9999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3415158IPR003441NAC domain
PROSITE profilePS5100533.89218214IPR003441NAC domain
PfamPF023658.2E-1819148IPR003441NAC domain
SuperFamilySSF1019411.7E-34202214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAGPGVCINL LNGTTMHLPV GCVFRPTEGE LVVNYLYRRA MQEPLPCDFI TDVDIQCHNP  60
WDIVPAGEKK NGKHFFTRKE NSHPRDHKSN HAAGDGFWRL AGTEVPIYNK PSGGADEKLV  120
GMKRTLVFHF RKSSSIERTG WVMQEFRLAG ASLVPCLVMR PATGDVFMPP CGCTETTTTK  180
KNNGSLSAAH THAPLVETMV EPDNSWMICR IYKKRQRAPQ VIIPPSIGNA REAVLAVPAI  240
GNAGDRQVNF IDFPGHRCFE EGSDESANVI TKDKGSDGYG KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-201614813140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.917690.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1127871570.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-180CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.11e-126PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA2ZEM10.0A2ZEM1_ORYSI; Uncharacterized protein
STRINGOBART11G14720.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.13e-26NAC domain containing protein 47