PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035328-PA
Common NameOsI_36237
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 298aa    MW: 32897.1 Da    PI: 6.5093
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035328-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.55.8e-32191419128
               NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....k 96 
                       Pt+ +lvv+yL++++ ++++++ ++i++vdi++++Pwd+   v+++++  +fF++++++ + ++r+nra+ +g+W+  g++ +v++k     +
  BGIOSGA035328-PA  19 PTNADLVVHYLHRRAIQEPVPC-DFITNVDILQHNPWDIV-PVEEKTNGKHFFIHEENERPGNHRSNRAAGDGFWRPAGSEVPVYHKrsggaD 109
                       9*********************.99**************5.577788899************************************9887777 PP

               NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++lvg+k+tLvf+ g+++++++t+Wvm+e+rl
  BGIOSGA035328-PA 110 EALVGMKRTLVFHYGNSSSAKRTEWVMQEFRL 141
                       777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.07711228IPR003441NAC domain
SuperFamilySSF1019413.92E-3118145IPR003441NAC domain
PfamPF023657.9E-1519141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MASPGVCINL VNGTSTRLPT NADLVVHYLH RRAIQEPVPC DFITNVDILQ HNPWDIVPVE  60
EKTNGKHFFI HEENERPGNH RSNRAAGDGF WRPAGSEVPV YHKRSGGADE ALVGMKRTLV  120
FHYGNSSSAK RTEWVMQEFR LAGATLIPCP VTRPATGDGS MLALPPHRND HRHDLQVLEP  180
KGDLTFWIAI LYISENNGSP SAGQTQGPLE KTMVEPDSSL RICRIYKKRQ RTPQFIIPPS  240
IGDARELILA LPTIGNTREV ALALPAIDFL GQPSFEEGSD VSADVITDDK DGYGHGMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-181914123140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.942650.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977283860.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420100.0AK242010.1 Oryza sativa Japonica Group cDNA, clone: J075106F03, full insert sequence.
GenBankEU8470010.0EU847001.1 Oryza sativa Japonica Group clone KCS322B05 NAM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616648.10.0NAC transcription factor NAM-1
TrEMBLA2ZEM00.0A2ZEM0_ORYSI; Uncharacterized protein
STRINGORUFI11G15720.10.0(Oryza rufipogon)
STRINGOS11T0512100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-24NAC domain containing protein 83