PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035151-PA
Common NameOsI_35857
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 269aa    MW: 31106.2 Da    PI: 7.8292
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035151-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1478.6e-151197191
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk.leleHnHelap 91
                      +fY++YA ++GF+++ks+++k         r+ +C++egk+ ++ ++  +++ +r+++++gCka +k++ ++       +v++ +el+HnH+l+p
  BGIOSGA035151-PA 11 NFYQRYACHAGFDIKKSRMHKA-------FREVCCTREGKHVSKVNN-GDRQWRRPSKKMGCKAYVKLRHNYnggALSSVVYDvVELQHNHPLTP 97
                      6****************99998.......7899**********9999.88999******************9543234456651569*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-101197IPR004330FAR1 DNA binding domain
PfamPF105511.7E-10227267IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAFPTYDDAY NFYQRYACHA GFDIKKSRMH KAFREVCCTR EGKHVSKVNN GDRQWRRPSK  60
KMGCKAYVKL RHNYNGGALS SVVYDVVELQ HNHPLTPSPS AVKHMRAHKN RDDTFMQFMD  120
TMQESHVPKS CIMGILFDLH GGQENIPFTS HDVENRTFPS DRCMKAANVR KENADDINKL  180
LEFFNECTLQ NPKFYWDAQL DENGVIKNLF WSHASSQDEF ADFGYAVTFD TTYKTNIYEM  240
PLAMFVGANH HMQSTLFGCA LLRDEKAVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882211.11e-130protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8BK500.0B8BK50_ORYSI; Uncharacterized protein
STRINGORGLA03G0393200.11e-105(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-35FAR1-related sequence 5