PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034760-PA
Common NameOsI_35037
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 561aa    MW: 61424.3 Da    PI: 5.2688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034760-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3242.9e-991735531373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arl++   +l + l +s+++  +  e l a+++f  ++ +  +
  BGIOSGA034760-PA 173 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPAGDATERLAHYFADGLEARLTG-AASLERRLLASAER-ASAMELLEAYQVFMAACCFKWV 263
                       689****************************************************.67777777666665.579999**************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                       ++  aN aIl+a+eg +++Hi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f++++a
  BGIOSGA034760-PA 264 AFTFANMAILRAAEGRSKLHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPFKFRAVAA 356
                       ************************86538*************************************************************999 PP

              GRAS 184 krledleleeL...rvkp.gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                        r+e+++ e+     v+p +Ea++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++salfd+
  BGIOSGA034760-PA 357 ARWETVTAEDVgggGVDPdEEAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDM 449
                       9**********8777999999*****************98877779*********************************************** PP

              GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                       l a+ p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++gW
  BGIOSGA034760-PA 450 LGATTPEEGsHLRVVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEGDVVEAVRRRVRRRHHEEFVIEEDAGWLLQGW 542
                       *77777765499****************************************************************999************** PP

              GRAS 363 kdrpLvsvSaW 373
                       k+r L++ SaW
  BGIOSGA034760-PA 543 KGRILYAHSAW 553
                       *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.98147534IPR005202Transcription factor GRAS
PfamPF035141.0E-96173553IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MGPAAPPSEA AAAADDVVLP YISRILMEED MDDDVFFCLY PDHPALLEAQ QPFAQILSSS  60
SGIAGELNSA AMEDSAALMM QGSGNGRGRK GSKHGGDELE AEVGRASKLM ATLEEEDDDD  120
DGIGEMLEKM MLNGDEDEAF HGETNAPRVP AEKKGGKPAP RRRRQGKGEV VDLRELLMSC  180
AQAVASGNRR SAGELLEQIK RHSSPAGDAT ERLAHYFADG LEARLTGAAS LERRLLASAE  240
RASAMELLEA YQVFMAACCF KWVAFTFANM AILRAAEGRS KLHIVDYGGQ YHGLQWPSLL  300
QRLAEREGGP PEVRMTLVGH PQPGFRPARR LERTGRRLSN CARAFGLPFK FRAVAAARWE  360
TVTAEDVGGG GVDPDEEAVV VNDVLSLGTL MDESGVFDDP SPRDTVLGSI RDMRPAVFVQ  420
AVVNGAHGAP FFPTRFREAL FFFSALFDML GATTPEEGSH LRVVLERDVL RRAAVGVIAG  480
EGAERVERPE TYRRWQARNR RAGLRQVAVE GDVVEAVRRR VRRRHHEEFV IEEDAGWLLQ  540
GWKGRILYAH SAWVVAEDGA H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-3918055425378Protein SCARECROW
5b3h_D7e-3918055425378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.823820.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329830740.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLA2ZB910.0A2ZB91_ORYSI; Uncharacterized protein
STRINGONIVA11G02640.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.12e-81GRAS family protein