PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA034529-PA | ||||||||
Common Name | OsI_35042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 220aa MW: 24501.1 Da PI: 4.8093 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.4 | 3.8e-12 | 17 | 92 | 2 | 73 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkr 73 p G+ F P+ e+l+ +yL++ ++g++ e+ ++++e+d+y ++P +L + ++ ++ k+wyf ++r+ + g+r BGIOSGA034529-PA 17 PSGYFFVPKPEQLIRDYLNHWITGRPSEElRDIVREADVYGSDPATLTEahsAYGHDGKSWYFLTRRRVIEGYGDR 92 89************************66515679999**********84344444577899*99999876666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-18 | 14 | 134 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.421 | 16 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-5 | 17 | 111 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPSEELRDIV READVYGSDP 60 ATLTEAHSAY GHDGKSWYFL TRRRVIEGYG DRQAFEYRAP GNKKTDWLME EIASNLPAAI 120 TDEGIMVICK VYLSPRAKEA TANEEERQET NVVPGPKRLR EAEATGYDAP APPQPDVGCS 180 YSGGGETSQA TASMDYCCST TTHTADDTSS GQCRLLPRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664975.1 | 6e-60 | PREDICTED: NAC domain-containing protein 76-like, partial | ||||
TrEMBL | B8BJ05 | 1e-163 | B8BJ05_ORYSI; Uncharacterized protein | ||||
STRING | OBART12G02170.1 | 1e-133 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11474 | 18 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55210.1 | 2e-09 | NAC domain containing protein 63 |