PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034523-PA
Common NameOsI_35053
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 487aa    MW: 53063.2 Da    PI: 7.5348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034523-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.97.4e-110394762374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk+
  BGIOSGA034523-PA  39 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKL 130
                       679*******************************9*****************************888887544.44446778899******** PP

              GRAS  94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       ++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn+ v+ 
  BGIOSGA034523-PA 131 AYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEA 218
                       ************************966899****************************....9**************************.799 PP

              GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrll........................................................... 214
                       +l+++++++L     v++gEalaV++vlqlhrll                                                           
  BGIOSGA034523-PA 219 KLDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrhaaagcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphspaa 311
                       9**999998843335667*************************************************************************** PP

              GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                          +++++++ +  ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegae
  BGIOSGA034523-PA 312 ataAHPTTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAE 403
                       *98555555556999*********************************************999.68889************************ PP

              GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                       r+erhe++++W +r+e+aG++ v ls++ a++a+ ll+ +++ g y+v ++   + ++++W++rpL++v+aWr
  BGIOSGA034523-PA 404 RVERHERARQWAARMEAAGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 476
                       *****************************************8888****884345678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.59712453IPR005202Transcription factor GRAS
PfamPF035142.6E-10739476IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLSSATSSPA SSVYSPSPSP SNGSWVQELS HDQQSVRLIG LLYQCAAEVS AGSFDRANLC  60
LEHITQLASL DAPHALQRLA AVFADALARK LLNLIPGLSR ALLSSANSAD AHLVPVARRH  120
MFDVLPFLKL AYLTTNHAIL EAMEGERFVH VVDFSGPAAN PVQWIALFHA FRGRREGPPH  180
LRITAVHDSK EFLANMAAVL SKEAEAFDIA FQFNAVEAKL DEMDFDALRH DLGVRSGEAL  240
AVSVVLQLHR LLAVDDGRRH AAAGCLTPVQ IIARSSPRSF GELLERELNT RLQLSPDASV  300
VSSLSPHSPA AATAAHPTTS TPKLGSFLSA VRSLSPKIMV MTEQEANHNG GAFQERFDEA  360
LNYYASLFDC LQRSAAAAAE RARVERVLLG EEIRGVVACE GAERVERHER ARQWAARMEA  420
AGMERVGLSY SGAMEARKLL QSCGWAGPYE VRHDAGGHGF FFCWHKRPLY AVTAWRPAAS  480
RRGHTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-306847632375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.575640.0callus| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329904460.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235270.0AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAC1514800.0AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616659.10.0scarecrow-like protein 3
TrEMBLB8BJ100.0B8BJ10_ORYSI; Uncharacterized protein
STRINGOS11T0141500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-105scarecrow-like 3