PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034521-PA
Common NameOsI_35055
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 510aa    MW: 55518.9 Da    PI: 6.0053
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034521-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.86.3e-95344844374
              GRAS   4 lLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilk 92 
                       +LlecA +v++g +e+a+++Lar   l  a+ +g  p +Rla  ++  La+rl+r v+ + +al  ps     +  ++ aa++ f+e+sP++k
  BGIOSGA034521-PA  34 ALLECAAHVETGPMERATRCLARATGLaaAAAAGdGPQKRLAEAMVDCLARRLLRPVQAITDALiDPSVYL--DRRSVRAARRGFFELSPFPK 124
                       79*********************999965555564699**********************99995444443..34555578899********* PP

              GRAS  93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       +++++ N+aI+eave+e+ vH++ ++   +q+ QW+ Ll++L  Rpegpp  +R+T+v++    + e l +++e L++ Aeel+++f+f+  v
  BGIOSGA034521-PA 125 VAFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHELRRRPEGPPrVVRLTVVHD----DGELLAKMAEVLSDEAEELDMEFQFHG-V 212
                       *************************86679****************9988789*******....***************************.7 PP

              GRAS 183 akrledleleeL....rvkpgEalaVnlvlqlhrll......................................................... 214
                       + +ledl++++L    ++k+gEal+V + lqlhrll                                                         
  BGIOSGA034521-PA 213 VGQLEDLDFSNLrdvlEIKSGEALVVICTLQLHRLLaadddamyssrsahlnqmasiaqlqqmavsscppstggggsvrykdddddpyrspat 305
                       999****9999876668999************************************************************************* PP

              GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres........eerikvEre 288
                                   +++++ +  ++L++v+ lsPk+vvv+eq+adhn+ sF +rf+eal++y+a+fdsl +a ++++s        +er+ vEr+
  BGIOSGA034521-PA 306 pltfvsppasTPHLQMPAALANFLSAVRALSPKIVVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLdDAAAATTSaashlwspDERAQVERV 398
                       ********87555555557778*********************************************766666666788899999******** PP

              GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ++g+ei+ v+   ga+rrerh +l++W +r+e+aGF+ vpls+ a  + + ++r+++ +  +  e  g+l+l+W++rpL+s+SaWr
  BGIOSGA034521-PA 399 VVGEEIKGVLLRDGAHRRERHDRLRQWAARMEMAGFTGVPLSYAAIRKGNDMVRRCGLRRCENRECGGCLLLCWSSRPLYSISAWR 484
                       *********************************************************887888899*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.2885464IPR005202Transcription factor GRAS
PfamPF035142.2E-9234484IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MFSGTDSSSP ELSLCSPYGP WTQGRGPTEE LGLALLECAA HVETGPMERA TRCLARATGL  60
AAAAAAGDGP QKRLAEAMVD CLARRLLRPV QAITDALIDP SVYLDRRSVR AARRGFFELS  120
PFPKVAFVVG NRAIVEAVEN ESLVHVVGMS GPFTQPCQWI QLLHELRRRP EGPPRVVRLT  180
VVHDDGELLA KMAEVLSDEA EELDMEFQFH GVVGQLEDLD FSNLRDVLEI KSGEALVVIC  240
TLQLHRLLAA DDDAMYSSRS AHLNQMASIA QLQQMAVSSC PPSTGGGGSV RYKDDDDDPY  300
RSPATPLTFV SPPASTPHLQ MPAALANFLS AVRALSPKIV VVAEQDADHN GVSFRKRFCE  360
ALHHYAAVFD SLDDAAAATT SAASHLWSPD ERAQVERVVV GEEIKGVLLR DGAHRRERHD  420
RLRQWAARME MAGFTGVPLS YAAIRKGNDM VRRCGLRRCE NRECGGCLLL CWSSRPLYSI  480
SAWRPAASGG AGSGSERSEY IHVGAEADDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-143748524379Protein SCARECROW
5b3h_D1e-143748524379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619131.10.0scarecrow-like protein 3
TrEMBLB8BJ120.0B8BJ12_ORYSI; Uncharacterized protein
STRINGOS12T0138200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-74scarecrow-like 3