PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA034469-PA
Common NameOsI_35175
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 363aa    MW: 40322.9 Da    PI: 7.0941
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA034469-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.72.3e-2838129187
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k ltpsdv+k++rlv+pk++ae++     g    ++  l++ede g  W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ 
  BGIOSGA034469-PA  38 FEKPLTPSDVGKLNRLVIPKQHAERYfplgaGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRG 129
                       99****************************9666678899************************************************7642 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-4132153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2935130IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-2737131No hitNo description
PfamPF023628.7E-2638129IPR003340B3 DNA binding domain
SMARTSM010191.3E-2138144IPR003340B3 DNA binding domain
PROSITE profilePS5086312.77438144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA  60
ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD  120
VVHFERVRGS FGVGDRLFIG CRRRGDAAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS  180
TSGGGSYPTS PANSYAYRRA ADHDHGDMHH ADESPRDTDS PSFSAGSAPS RRLRLFGVNL  240
DCGPEPEADT TAAATMYGYM HQQSSYAAMS AVPSYWLFSS SSWLPETLLT VWAPGSRHGW  300
GGFRKHQVEK ERGIEETGRE LYVCQYVSSV CIVGPRTNPE ADVSTPASSG NITLSPFHLF  360
YCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-49331443113B3 domain-containing transcription factor NGA1
5os9_B6e-49331443113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.530190.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329805110.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704870.0AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615108.10.0B3 domain-containing protein Os11g0156000
SwissprotQ53QI00.0Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLB8BJ680.0B8BJ68_ORYSI; Uncharacterized protein
STRINGOS11T0156000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-52B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]