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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA034459-PA | ||||||||
Common Name | OsI_35198 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 678aa MW: 69897.7 Da PI: 6.6691 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 382 | 419 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + BGIOSGA034459-PA 382 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 419 664459******************************88 PP | |||||||
2 | BELL | 118.3 | 3.6e-38 | 243 | 314 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk kL+++l+eV++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+ BGIOSGA034459-PA 243 ERQELQMKKGKLINMLDEVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFRCLRDAIAGQV 314 79*******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-61 | 161 | 312 | IPR006563 | POX domain |
Pfam | PF07526 | 4.2E-50 | 169 | 311 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 360 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.73E-13 | 363 | 424 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 363 | 427 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.59E-17 | 364 | 430 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-29 | 366 | 429 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 380 | 419 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MAAYYHGGAG TDIQSGTDGL QTLYLMNPSY AGYGDAAAAA AAPGAAANMM LLNSAVTSMT 60 PVSFGHQPSP SSSSAAQHFV GIPLQAPPAS GYNLWTPAAA TGAGDMSPPT PQHQHQQAHG 120 GGAAGVSAVL SLSSREAAPP VTVAAVVAAG DEGKYLQAVA QGAASHGQMV MSSKYLKAAQ 180 ELLDEVVSVS KGVDDVKAAA AAKSPASVKK KEDSEGVSGG GTEDGGGAKS GGAPPPPEMS 240 TAERQELQMK KGKLINMLDE VEQRYRQYHQ QMQVVVASFE AVAGGGSART YTALALRTIS 300 RQFRCLRDAI AGQVRAASRA LGEAVDADGG CGRTVGSRLR YIDHQLRQQR ALQQLGMMQS 360 SAWRPQRGLP ERSVSILRAW LFEHFLHPYP KDSDKIMLAK QTGLTRSQVS NWFINARVRL 420 WKPMVEEMYL EETKDQDGGG GAGAGDEGSK PGGSKGGGAG VNGGVVDSAA KMDSKAAHME 480 SGGGVHPSLL ELAGDHQAQA GFYDDDDEDG GAAAALQQKL KKARTEEQQQ AAFHVSDVAT 540 LHAHAAAAAA ARHDEVSHRE LLMKFMESGS AGAGAGAAAR DHHHEHHGGV GYSLFAPAPY 600 GQFATEQFAF AGHGGGGGGG GVSLTLGLPH GAEQTASFLM TSSNGSDGAG HVAGGGGYDM 660 NMQSTKSFAA QLMRDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-17 | 369 | 427 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-17 | 369 | 427 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 369 | 427 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 369 | 427 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11805 | 0.0 | leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297611275 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133217 | 0.0 | AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616922.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616923.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616924.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616925.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-113 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | B8BJ81 | 0.0 | B8BJ81_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q2RAA7 | 0.0 | Q2RAA7_ORYSJ; Associated with HOX family protein, expressed | ||||
STRING | OGLUM11G03520.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4816 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 6e-90 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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