 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA033954-PA |
| Common Name | OsI_36189 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
SBP |
| Protein Properties |
Length: 233aa MW: 25365.2 Da PI: 7.6946 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA033954-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 45.6 | 1.9e-14 | 20 | 50 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS
SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
rfh+l efD++k+sCr+rL++hn+rrrk+q+
BGIOSGA033954-PA 20 RFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 50
9***************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MAYENYANTT VSVNLNLQYR FHNLAEFDDG KKSCRKRLDG HNRRRRKPQH DALNPRSFLP 60
YHQANQFSVY PQTFPIADQN ADALMRPLDR HPPFSISFSG TFRELKQFPF MQDGGSGLGA 120
ARHDLLRPFS SPEDGANITT TRSACNGVPH GLDPECALSL LSSSLHPSPA AGISSATAPP 180
QFAPSSFSRI AASSQAVTTA FASDGGSVAG DHVLVPAVTY EDPSQAMPFS WQV
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 30 | 47 | KKSCRKRLDGHNRRRRKP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
