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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA033939-PA |
| Common Name | OsI_36217 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
GRAS |
| Protein Properties |
Length: 318aa MW: 34905.2 Da PI: 8.0019 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA033939-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 20.5 | 4.8e-07 | 13 | 53 | 1 | 41 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRl 41
lv+lLl+cA+ vs+gd+ +a + L l+ asp gd+mqR+
BGIOSGA033939-PA 13 LVHLLLACADLVSKGDHPAALRHLHLLRRVASPLGDSMQRA 53
68**************************************7 PP
|
| 2 | GRAS | 332.4 | 8.2e-102 | 52 | 317 | 100 | 374 |
GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
+aI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+ +++etg+ La++A++l+vpfef++ +a+rle l++
BGIOSGA033939-PA 52 RAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PPAAVRETGRHLASLAASLRVPFEFHAAAADRLERLRPA 140
79************************************************....99*************************9999******** PP
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
+L+ + gEalaVn v +lhr++ +s+ + +L+++++ Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kv
BGIOSGA033939-PA 141 ALHRRVGEALAVNAVNRLHRVP------SSHLPPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEALHYYSAIFDSLDATFPAESTARMKV 227
*********************9......445566*********************************************************** PP
GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
E+ ll++ei+nvvacegaer++rhe+le+Wr+ +e GF++vpls a+ q + ll ++ +dgyr+ e+sg+l+lgW+dr+++++SaWr
BGIOSGA033939-PA 228 EQCLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCLLLGWQDRAIIAASAWR 317
*****************************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MVKVVEQDSG LQLVHLLLAC ADLVSKGDHP AALRHLHLLR RVASPLGDSM QRAIFEAFHG 60
EDRVHVVDLD ILQGYQWPAF LQALAARPGG PPTLRLTGVG HPPAAVRETG RHLASLAASL 120
RVPFEFHAAA ADRLERLRPA ALHRRVGEAL AVNAVNRLHR VPSSHLPPLL SMIRDQAPKI 180
ITLVEQEAAH NGPYFLGRFL EALHYYSAIF DSLDATFPAE STARMKVEQC LLAPEIRNVV 240
ACEGAERVAR HERLERWRRL MEGRGFEAVP LSAAAVGQSQ VLLGLYGAGD GYRLTEDSGC 300
LLLGWQDRAI IAASAWRC
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
