PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033493-PA
Common NameOsI_34761
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 664aa    MW: 71215.5 Da    PI: 7.1346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033493-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12489534454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  BGIOSGA033493-PA 489 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 534
                       799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.4E-2058146IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142152.5E-11142213IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39485534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-18488561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.71E-14488538No hitNo description
PfamPF000104.3E-10489534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18489556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16491540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MMEAFMASAD LPAFPWGAAS TPPPPPPPPH HHHQQQQQQV LPPPAAAPAA AAFNQDTLQQ  60
RLQSIIEGSR ETWTYAIFWQ SSIDVSTGAS LLGWGDGYYK GCDDDKRKQR SSTPAAAAEQ  120
EHRKRVLREL NSLIAGAGAA PDEAVEEEAL FAAQPTWIAT GLSSAPCDRA RQAYTFGLRT  180
MVCLPLATGV LELGSTDVIF QTGDSIPRIR ALFNLSAAAA SSWPPHPDAA SADPSVLWLA  240
DAPPMDMKDS ISAADISVSK PPPPPPHQIQ HFENGSTSTL TENPSPSVHA PTPSQPAAPP  300
QRQQQQQQSS QAQQGPFRRE LNFSDFASNG GAAAPPFFKP ETGEILNFGN DSSTGRRNPS  360
PAPPAATASL TTAPGSLFSQ HTPTLTAAAN DAKSNNQKRS MEATSRASNT NNHPAATANE  420
GMLSFSSAPT TRPSTGTGAP AKSESDHSDL EASVREVESS RVVAPPPEAE KRPRKRGRKP  480
ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAISY INELRGKLTA  540
LETDKETLQS QMESLKKERD ARPPAPSGGG GDGGARCHAV EIEAKILGLE AMIRVQCHKR  600
NHPAARLMTA LRELDLDVYH ASVSVVKDLM IQQVAVKMAS RVYSQDQLNA ALYTRIAEPG  660
TAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-39532164195Transcription factor MYC3
4rqw_B4e-39532164195Transcription factor MYC3
4rs9_A4e-39532164195Transcription factor MYC3
4yz6_A4e-39532164195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470478KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1004840.0leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567646970.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in spikelets and floral organs. {ECO:0000269|PubMed:24647160}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0607550.0AC060755.9 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence.
GenBankAK2880820.0AK288082.1 Oryza sativa Japonica Group cDNA, clone: J075172G09, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY5364280.0AY536428.1 Oryza sativa MYC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614012.20.0transcription factor MYC2-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLB8BIE00.0B8BIE0_ORYSI; Uncharacterized protein
STRINGONIVA10G22030.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-116bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]