PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033234-PA
Common NameOsI_34228
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 810aa    MW: 92002.8 Da    PI: 8.6976
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033234-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.67.4e-2212100290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       f+ +Y+ + GF+vrk++s+k+k +g++ + ++vC +eg+r+e+k++ + +  +raetrt+C+ ++ v +++ +g+++v++l+leHnH l+
  BGIOSGA033234-PA  12 FWVSYGGQKGFEVRKRYSNKRKSDGKVRSCRYVCANEGHRKEDKRD-HLTMCPRAETRTDCQVRMGVVLDQeKGNYKVADLVLEHNHILQ 100
                       99*****************************************999.9999*****************9999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-171299IPR004330FAR1 DNA binding domain
PfamPF105514.9E-25222316IPR018289MULE transposase domain
PROSITE profilePS509669.174462498IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-5470495IPR007527Zinc finger, SWIM-type
SMARTSM005758.5E-5473500IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MEFNTVDEAW MFWVSYGGQK GFEVRKRYSN KRKSDGKVRS CRYVCANEGH RKEDKRDHLT  60
MCPRAETRTD CQVRMGVVLD QEKGNYKVAD LVLEHNHILQ LPETSHLMVS QRKISELQGF  120
EIETADDAGI GPKAAHQLAS IQVGGSLNLN YTLRDHKNYL RGKRQREMVY GQAGSMLMHF  180
QDKIAENPSF QYALQMDSEE QIANIFWVDA KMLTDYAYFG DVVSFDTTFG TNKESRPFGV  240
FVGFNQFRET MVFGAILLYD ETYESFKWLF ETFLKAHNGK QPKTIYIDQD SAMGKAIKKV  300
FLESWHGLCT FHIMQNAVKH VAELEDEESS NSPKQTAEDN KEERSILADF SACMFEYEDE  360
ETFEQAFSTI RAKASKQSWV VEDKRENELN TEFESRKKIP RIKMRTPMLI QASKLYTPII  420
FEAFQAEYER SMVACTTALE GNNCYLVAIG SLDENCTFEK EYKVVGDPLE QTSTCGCGMF  480
SRTGILCAHA LKVLDLMNIK SLPSQYVLKR WTRGARSGTV QDNHGRSIIE NPRLNEMLRY  540
KDMTRKFLNL ALRAASHPGS TLLVNNTLDI LSKQVEEEIN GFTDTIALGP TDVTPPSDLV  600
STARLKKKEV ETKTSKRKKN WLDKLHKSTK NGSNKGGKRK KKGSKEQKTA KTGGKKKGKE  660
ASVHDNPAGQ NIYPSTSLPM EEMSEPYMAI NTFSQLLTYL QNAIRFDIQQ SNIPGRSIKE  720
LKRRPLCSST RSLLRDGEEE FLLSLTAEEA AMFLHSLPFS IRRALPVAAH GLLELGTRTS  780
SSWHRCAVAV TKRCILHTFR SPSPQLSTAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788400.0AC078840.6 Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence.
GenBankAC0840230.0AC084023.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877975.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8BHR20.0B8BHR2_ORYSI; Uncharacterized protein
STRINGSb09g006170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-74FAR1-related sequence 5