PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033144-PA
Common NameHB2, HOX9, OsI_032907
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 799aa    MW: 88578.2 Da    PI: 5.2903
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033144-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-18563357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++ps ++r++L + +    +++ +q+kvWFqNrR ++k+
  BGIOSGA033144-PA  5 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCpilaNIEPKQIKVWFQNRRCRDKQ 63
                      5678****************************************************996 PP
2START118.97.1e-3818433360204
                       HHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-E CS
             START  60 llveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRae 146
                       + ve+l d++  W +++++ e+      g  g+++l +++++a+++lvp Rdf+++Ry+ ++ +g++v++++S++     p+    +++vRae
  BGIOSGA033144-PA 184 DIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMDDGSLVVCERSLSGSGGGPStasAQQFVRAE 275
                       4566666666.***********999999999********************************************9999998888899***** PP

                       ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
             START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                       +lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s+++ ++k+++a+l++ +
  BGIOSGA033144-PA 276 MLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTAALRHIR 333
                       ******************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.483164IPR001356Homeobox domain
SMARTSM003891.1E-15268IPR001356Homeobox domain
SuperFamilySSF466895.56E-16568IPR009057Homeodomain-like
CDDcd000864.15E-16565No hitNo description
PfamPF000464.6E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-18760IPR009057Homeodomain-like
CDDcd146862.15E-65796No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-461111No hitNo description
PROSITE profilePS5084822.129133344IPR002913START domain
SuperFamilySSF559619.2E-29138338No hitNo description
SMARTSM002341.7E-25142335IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-17184311IPR023393START-like domain
PfamPF018522.4E-35184333IPR002913START domain
PfamPF086703.7E-49656798IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MDSGKYVRYT PEQVEALERV YAECPKPSSS RRQQLLRDCP ILANIEPKQI KVWFQNRRCR  60
DKQRKEASRL QAVNRKLTAM NKLLMEENER LQKQVSQLVH ENAYMKQQLQ NPSLGNDTSC  120
ESNVTTPQNP LRDASNPSGL LTIAEETLTE FLSKATGTAV DWVPMPGMKV DCQLLRFTLP  180
ASNDIVEILK DRPSWFRDCR SLEVFTMFPA GNGGTIELVY MQMYAPTTLV PARDFWTLRY  240
TTTMDDGSLV VCERSLSGSG GGPSTASAQQ FVRAEMLPSG YLVRPCEGGG SIVHIVDHLD  300
LEAWSVPEVL RPLYESSRVV AQKMTTAALR HIRQIAQETS GEVVYALGRQ PAVLRTFSQR  360
LSRGFNDAIS GFNDDGWSVM GGDGIEDVII ACNAKKVRNT STSANAFVTP GGVICAKASM  420
LLQSVPPAVL VRFLREHRSE WADYNFDAYS ASSLKTSSCS LPGLRPMRFS GSQIIMPLAH  480
TVENEEILEV VRLEGQALTH DDGLMSRDIH LLQLCTGIDE KSMGSCFQLV FAPIDELFPD  540
DAPLISSGFR VIPLDMKTDG TPAGRTLDLA SSLEVGSTAQ PTGDASMDDC NLRSVLTIAF  600
QFPYEMHLQD SVATMARQYV RSIVSSVQRV SMAISPSRSG LNAGQKIISG FPEAPTLARW  660
ICQSYQFHLG VELLRQADDA GEALLKMLWD YEDAILCCSF KEKPVFTFAN EMGLNMLETS  720
LVALQDLSLD KIFDEAGRKA LYNEIPKLME QGYVYLPGGV CLSGMGRHVS FEQAVAWKVL  780
GEDNNVHCLA FCFVNWSFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.463120.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329878120.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028300.0AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614901.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A0E0BBT00.0A0A0E0BBT0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IU350.0A0A0E0IU35_ORYNI; Uncharacterized protein
STRINGOGLUM10G13240.20.0(Oryza glumipatula)
STRINGONIVA10G14800.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]