PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032905-PA
Common NameOsI_33556
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 462aa    MW: 49065.4 Da    PI: 5.0318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032905-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.67.1e-082271149
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk 49
                      lp+GfrF P+d+el+ + L  k+ g +    l+ v+++++i++++P +L  
  BGIOSGA032905-PA 22 LPRGFRFVPQDQELL-DILDDKLGGAPldRALDAVFHDTRILDFHPAKLYG 71
                      799************.88*********53333456**************63 PP
2NAM39.51.7e-1212319654127
               NAM  54 eek.ewyfFskrdkkya...tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       ee+  +yfFs+ + k+a   ++k ++ra++ g+Wka   + ++++ +g  vg k ++ fy     kg++t+W mhe+ 
  BGIOSGA032905-PA 123 EENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVLGSSQMVEVGGVPVGRKLSMEFY----VKGVRTNWGMHEFV 196
                       3333559**998777663335778899********88666666666**************....899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-91791IPR003441NAC domain
PROSITE profilePS5100519.5622216IPR003441NAC domain
PfamPF023652.0E-1123195IPR003441NAC domain
SuperFamilySSF1019412.88E-15123214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAAPGDGEEK NGAGSGKNKH GLPRGFRFVP QDQELLDILD DKLGGAPLDR ALDAVFHDTR  60
ILDFHPAKLY GSHRLSIPLP LSLSLSFFFF SGDGLGGCSW GFDFDSGGLD WFGATQGMYA  120
EDEENGYIYF FSTIEFKAAK PKQKKWPRRA AQGGRWKAVL GSSQMVEVGG VPVGRKLSME  180
FYVKGVRTNW GMHEFVRIIG PNIEVADLAV YRLHKLWTNG EEKPGDLAAD VAKSTNQSGQ  240
ASAADYYQTY QNAVSQAYAY APPYVLQPGW SQGYPYDVAA APPTAPWPVC WAPPSAPGSY  300
DCCYASTFSR PPPPPPIAAS TLDKAPITST DHGASTNTSA ATPAANNKPP PPPVAATATT  360
LGKKGEGKGK APTTTSTDHA GSTNTSAPPA ANYQPPPLQG TQHVFAPGVV VGHEDEEGYL  420
IVDEVNTWRN TQQLVLEDDD DDDDGRAAGA GAGEGGASAS GR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154819990.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099040.0AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.10.0uncharacterized protein LOC4348616
TrEMBLA2Z7840.0A2Z784_ORYSI; Uncharacterized protein
STRINGOBART10G09840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.13e-08NAC domain containing protein 3