PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032901-PA
Common NameOsI_33551
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 416aa    MW: 44463.3 Da    PI: 5.6379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032901-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.33.5e-24221492127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya...tgkrknratksgyWkatg 87 
                       p+GfrF P+d+el+ + L  k++g +    l+ v+++++i++++P +L  + ++ ee+  +yfFs+ + k+a   ++k ++ra++ g+Wka  
  BGIOSGA032901-PA  22 PRGFRFVPRDQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYgMYAEDEENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVL 113
                       89************.88*********53333456**************83344444443459**998777663335778899********886 PP

               NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        + ++++ +g  vg k ++ fy     kg++t+W mhe+ 
  BGIOSGA032901-PA 114 GSSQMVEVGGVPVGRKLSMEFY----VKGVRTNWGMHEFV 149
                       66666666**************....899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3016167IPR003441NAC domain
PROSITE profilePS5100524.92621169IPR003441NAC domain
PfamPF023652.0E-1222148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAAPGDGEEK KAGSGRNKHG FPRGFRFVPR DQELLDILDD KLRGAPLDRA LDAVFHDTRI  60
LDFHPAKLYG MYAEDEENGY IYFFSTIEFK AAKPKQKKWP RRAAQGGRWK AVLGSSQMVE  120
VGGVPVGRKL SMEFYVKGVR TNWGMHEFVR IIGPNIEVAD LAVYRLHKLW TNGEEKPGDL  180
AADVAKSTNQ SGQASAADYY QTYQNAVSQA YAYALPYVLQ PGWSQGYPYD VAAAPPTAPW  240
PVCWAPPSAP GSYDCCYAST FSRPPPPPPI AASTLDKAPI TSTDHGASTN TSAATPAANN  300
KPPPPPVAAT ATTLGKKGEG KGKAPTTTST DHAGSTNTSA PPAANYQPPP LQGTQHVFAS  360
GVVIGHEDEE GYLVVDEVNT WRNTQQLVLE DDDDDDDDGR AAGAGAGEGG ASASGR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154819990.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099040.0AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.10.0uncharacterized protein LOC4348616
TrEMBLA2Z7790.0A2Z779_ORYSI; Uncharacterized protein
STRINGOBART10G09840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-11NAC domain containing protein 3