PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032882-PA
Common NameHOX23, OsI_032377
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 351aa    MW: 36392.6 Da    PI: 6.391
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032882-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-19104157356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ eq+++Le+ Fe+ +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  BGIOSGA032882-PA 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 157
                       456899***********************************************9 PP
2HD-ZIP_I/II127.84.6e-41103194192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrls eqv++LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkd++aL+r++da ++en++L + +++L++e+ 
  BGIOSGA032882-PA 103 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIV 194
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1982160IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1993161IPR009057Homeodomain-like
PROSITE profilePS5007117.31399159IPR001356Homeobox domain
SMARTSM003891.8E-19102163IPR001356Homeobox domain
PfamPF000461.2E-16104157IPR001356Homeobox domain
CDDcd000863.72E-17104160No hitNo description
PRINTSPR000315.1E-6130139IPR000047Helix-turn-helix motif
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PRINTSPR000315.1E-6139155IPR000047Helix-turn-helix motif
PfamPF021831.6E-9159198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MASNGAAAGA MAPFFPPNFL LQMQQPLPLH HQHLQDHAHG GHGGHHLLPP PPPSLSPFLP  60
DLAMDAPPPP MYEASGGDGG GGGAASEDEE DGCGGGGGGG GGEKKRRLSV EQVRTLERSF  120
ESGNKLEPER KAQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDFDALRR QLDAARAEND  180
ALLSLNSKLH AEIVALKGGA AAAGGGGSSC RQEAASELIN LNVKETEASC SNRSENSSEI  240
NLDISRPAPP PPPPPANESP VNRGIPFYAS IGRGGAGGVD IDQLLLRGGH SPSPAAVTTP  300
PPPKMELGIT GNGGGADAAA AGAGSFGGLL CGAVDEQPPF WPWADGHHHF H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.705140.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166313940.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377490.0CT837749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA049M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613423.10.0homeobox-leucine zipper protein HOX23-like
SwissprotA2Z7340.0HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL50.0HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A0E0QYV40.0A0A0E0QYV4_ORYRU; Uncharacterized protein
TrEMBLA0A0P0XTW00.0A0A0P0XTW0_ORYSJ; Os10g0404900 protein
STRINGORUFI10G09770.10.0(Oryza rufipogon)
STRINGOS10T0404900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.18e-46HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]