PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 329aa MW: 34728.1 Da PI: 7.1383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA032814-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.7	5.7e-15	111	162	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+ BGIOSGA032814-PA 111 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 162 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-14	109	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.37E-15	109	166	No hit	No description
PROSITE profile	PS50888	16.412	110	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-17	110	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-12	111	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MALEAVVYSH GDHFGGYGGG LMGGAPAAPW DVFAAAAAGG GGSWDDPGLF AAEASLDVIQ 60 GVDEWEVDQD QHASSSSKVA ARPPVKAAAA AGKRKRRRAK AAKNREEIES QRMTHIAVER 120 NRRRQMNEYL AVLRSLMPPS YAQRGDQASI VGGAINYVRE LEQLLQTLEA RRTIKDHIDG 180 GAGESPSPFA GFFAFPQYST ATSGHGGGGD AHSRIVVKPA ETTTTAAGGG AGAAIADIEA 240 SMVEGHASVK VQARRRPRQL LKLVAGLHQL GLTTLHLNVT TVAAMAMYSF SLKVEDGCKL 300 GSVEEIATAV HEILERMQEQ AFADAKTSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	97	KRKRRR
2	93	97	RKRRR
3	111	122	RMTHIAVERNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.46600	0.0	panicle\| root\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32968827	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058809	0.0	AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613301.1	0.0	transcription factor bHLH96
Swissprot	Q9C7T4	1e-75	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A2Z6N0	0.0	A2Z6N0_ORYSI; Uncharacterized protein
STRING	ORUFI10G08570.1	0.0	(Oryza rufipogon)
STRING	OS10T0376900-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-57	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]