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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA032809-PA | ||||||||
Common Name | OsI_33300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CAMTA | ||||||||
Protein Properties | Length: 995aa MW: 111455 Da PI: 5.9585 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 175.1 | 9.5e-55 | 20 | 137 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkD ++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++ BGIOSGA032809-PA 20 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDSHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENEN 112 45559**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+Lee++ +ivlvhyle+k BGIOSGA032809-PA 113 FQRRTYWMLEEDFMHIVLVHYLETK 137 **********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.741 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-75 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.2E-48 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.4E-6 | 415 | 501 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 1.7E-8 | 416 | 494 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.8E-18 | 416 | 502 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.64E-15 | 608 | 711 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.2E-16 | 610 | 713 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.88E-11 | 611 | 709 | No hit | No description |
PROSITE profile | PS50297 | 15.433 | 617 | 711 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 650 | 682 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 5.04E-8 | 809 | 863 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.37 | 812 | 834 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.748 | 813 | 842 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.022 | 814 | 833 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0059 | 835 | 857 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.542 | 837 | 860 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.9E-4 | 838 | 857 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 995 aa Download sequence Send to blast |
MAADARRFAV VPQLDIAQIL KEAQQRWLRP AEICEILKNY KSFRIAPEPP NRPQSGSLFL 60 FDRKVLRYFR KDSHNWRKKK DGKTVKEAHE RLKSGSIDVL HCYYAHGEEN ENFQRRTYWM 120 LEEDFMHIVL VHYLETKGGK SRTRGNNDMH QAAVMDSPLS QLPSQTIDGE SSLSGQFSEY 180 EEAESGNYQG QHAMGHTTNF YSSSQHDSPL VLSDPNLELE NNGHESLWNG VMKTDEGTVQ 240 MTHLQPPVHP EQGMFTTEGQ GVEYLTFDEV YSDGLSLKDI GAAGADVEPF WQFSSNSYLT 300 EAIAFQLSSA TADISATENS VQQNDGSLGA AIGFPFLKTQ SSNLSDILKD SFKKSDSFTR 360 WMSKELLDVE DSQIQSSSGA YWNTEEADSI IEASSREPLD QFTVAPMVLQ DQLFSIVDFS 420 PSWTYSGSKT KVLVTGRFLH ANEVTERCKW SCMFGEVEIQ AEISADGTLR CYSPPHKPGR 480 VPFYVTCSNR LACSEVREFE FRPSDSQYMD APSPLGATNK VYFQIRLDNL LSLGPDVYQA 540 TITNPSKEMI DLSKKISSLL ANNDEWSKLL KLADDNEPLS HDQQDQYAEN LIKEKLHVWL 600 LHKVGNGGKG PSVLDDEGLG VLHLAAALGY DWAIRPTVTA GVNINFRDFH GWTALHWAAF 660 CGRERTVVAL IALGAAPGAL TDPHPNYPAE STPADLASAN GHKGISGFLA ESSLTSHLQA 720 LNLKEANMSE ISGLPGIGDI TERNASQPAI GDSLGAVRNA AQAAARIYQV FRVQSFQRKQ 780 AVQYEGDKGG ISDEHTLSLL SMKPSKSGQL DPLHAAASRI QNKYRGWKGR KEFLLFRQRI 840 VKIQAHVRGH QVRKHYRKIV WSVGIVEKVI LRWRRRRAGL RGFRPTEGAI ESSSGGTSSN 900 LVTDKPAGDD YDFLQEGRKQ TEERLQKALA RVKSMVQYPE ARDQYQRILN VVSKMQESQT 960 VQEKILDEST EMDEGDFMSE FKELWDDDTP LPGYF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.25048 | 0.0 | callus| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986688 | 0.0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105116 | 0.0 | AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614396.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | B8BGI5 | 0.0 | B8BGI5_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA10G07730.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.1 | 0.0 | ethylene induced calmodulin binding protein |