PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA032532-PA
Common NameOsI_32745
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 442aa    MW: 48971.3 Da    PI: 6.9971
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA032532-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.71.3e-05385413432
                       -SS--HHHHHHHHHHHHHSSS--HHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeeree 32 
                         ++t++q+e+Le++++++++ps ++r++
  BGIOSGA032532-PA 385 YVQYTPDQVEALERVYAECPKPSFSRRQQ 413
                       6789*********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031409.8E-4251352IPR004158Protein of unknown function DUF247, plant
Gene3DG3DSA:1.10.10.605.6E-5366413IPR009057Homeodomain-like
CDDcd000860.00166388413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MPEACNDIAG SPAEGSCNCK GNSHVVVVID GNKTTAAAPT NRRDPEVCPL ISKVHGRVRS  60
IDPGAYDPMV VSLGPCHAGR DDLLQMQREK PMCLREICSL TGRTELYFLQ QVISAHLRQQ  120
ALAYYLHGIH DMKPAAAAAG RNESDNIILL NFRFNRMLLH DAAFLLVTMK ALDNVNEAAA  180
AHGERRTHGR WTDVAIVHDL LLLENQIPFT VVEKLYYEVA AVGEDDDEHC KPFSDVMRDF  240
VRSIIEKHAN RGCSIHQNGR AVHHLLHQCH MLLEPTKSPV TGDTTGSRDD DDDDDASVDR  300
LKRRWHRAVQ YHVAGVGLTK RIFDGGVRHH RLLDVEYRGG ALEIPVLHAA KGETLVVVVV  360
AGEEDGGSGS DGGGYDKAGM DSGKYVQYTP DQVEALERVY AECPKPSFSR RQQSPTSSPS  420
RRSRSGSQNR SLQMFDKKRM KE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303DRLKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.463371e-147leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329696751e-147
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA2Z5200.0A2Z520_ORYSI; Uncharacterized protein
STRINGONIVA07G05770.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.19e-10HD-ZIP family protein