 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA032409-PA |
| Common Name | HOX15, OsI_031417 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
HD-ZIP |
| Protein Properties |
Length: 248aa MW: 27249.7 Da PI: 8.057 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA032409-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.5 | 4.7e-18 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
BGIOSGA032409-PA 93 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 147
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 125.8 | 2e-40 | 93 | 181 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
BGIOSGA032409-PA 93 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 181
69*************************************************************************************9.4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MAQDDEDVGL ALGLSLGSGG HRRQRESRDE APSSAAASLL TLRLPAESGG QPQVVVKREV 60
VRAEEEEYEY EYERALYSSS AAAADDDEGC NSRKKLRLSK EQSALLEDRF KEHSTLNPKQ 120
KVALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCELLKR CCETLTEENR RLHRELQQLR 180
ALTHSTAAGF FMATTLPVPA ATLSICPSCE RLATAAAAAG ASPTAAADRT NKPTAPHLFS 240
PFAKSAAC
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 91 | 97 | SRKKLRL |
| 2 | 141 | 149 | RRARTKLKQ |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC069324 | 0.0 | AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence. |
| GenBank | AC099400 | 0.0 | AC099400.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0096E22, complete sequence. |
| GenBank | AC145127 | 0.0 | AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
