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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA031986-PA | ||||||||
Common Name | OsI_33453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 19416.5 Da PI: 10.5988 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 72.6 | 9.7e-23 | 35 | 164 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkya..tgkrknratksgyWkatgkd 89 +Gf F P+d e + ++k v+gk +l++v+k+++i+++ P+++ +++ e+ +yfFskr+ +++ +++r+ r+++ g+Wka+g + BGIOSGA031986-PA 35 LVGFYFVPKDLEFLAILMCKLVRGKVpGTLNNVFKHIRILNAtPPSSMT-YIETmEDGYIYFFSKRQFATKarNKRRPIRVADGGTWKASGGS 126 68*********************99944445669999876651677886.5555144577****998654433788999999*********** PP NAM 90 kevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127 k+v g +v k t+vfy + +++++kt+W mhe++ BGIOSGA031986-PA 127 KKVG---GIDVNQKFTMVFYerrFEGDRNPVKTNWGMHEFT 164 **95...599**********43313466778********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-26 | 28 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.358 | 34 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-12 | 36 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MGTAAAAVEA NSNDGKWKGK EKVVPEYGKN QHGMLVGFYF VPKDLEFLAI LMCKLVRGKV 60 PGTLNNVFKH IRILNATPPS SMTYIETMED GYIYFFSKRQ FATKARNKRR PIRVADGGTW 120 KASGGSKKVG GIDVNQKFTM VFYERRFEGD RNPVKTNWGM HEFTKIIPGT KN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.98420 | 1e-138 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 1e-151 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651177.1 | 2e-82 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | A2Z6Y3 | 1e-125 | A2Z6Y3_ORYSI; Uncharacterized protein | ||||
STRING | OBART10G08900.1 | 5e-92 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 5e-11 | NAC domain containing protein 94 |