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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA031841-PA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
E2F/DP |
| Protein Properties |
Length: 346aa MW: 36898.8 Da PI: 6.413 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA031841-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 85.8 | 3.2e-27 | 94 | 180 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
+++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
BGIOSGA031841-PA 94 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnfaspdpdnpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 180
689*******...*****999************************************************************.*******98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0007049 | Biological Process | cell cycle |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MVSGAAHSAS TSGGGGGSEG SPTGRAAPGM QGGGSAATPA ASASASTPAS ETTVARRLDG 60
LDIQGDDAPS SQPATSKKKK RGPGTRATGP DKGGRGLRQF SMKVCEKVES KGRTTYNEVA 120
DELVAEFADP NNNFASPDPD NPNTPQFDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG 180
LPRTSMSDVE ELKTEIIGLK GRIDKKNAYL QELEDQFVGL QNLAQRNEQL YGSGNAPSGG 240
VALPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD DSFVLKALGF SGKEPDDTQA 300
RVGNGGECST TPIYHQSPQV ARXNGVRLPT SPPIPGILKG RVKHEH
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY224551 | 0.0 | AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds. |
