 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA031252-PA |
| Common Name | OsI_32365 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
| Family |
Trihelix |
| Protein Properties |
Length: 337aa MW: 36421.1 Da PI: 6.9497 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA031252-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 37.4 | 6.8e-12 | 25 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...ts 73
+W+++ + L+ea++ ++ +r+klk +W +++ + ++p+qCk+k+e+++kry+++ + + + +
BGIOSGA031252-PA 25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaaaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAT 117
5*******************************9999999999**********9977778899******************9988887633235 PP
trihelix 74 essstcpyfdqle 86
++ ++++f +++
BGIOSGA031252-PA 118 GAGPSWRFFARMD 130
5667899999997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MDALPDAADA APLAAAAPPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH 60
EVSAHCAMEN AAAAAATGKP GSSTAKTPNQ CKNKIESMKK RYRAESAAAA RAGPAATGAG 120
PSWRFFARMD GLLKGPAGSG QPQAELSNSI DLRAPPPAKV EVDVDADFVS QLADAGPGAL 180
SELVSAYANG SIQEKLDKVE NSGQVEGRAA ESDVNVSSPR IKEANEDAEE VDKVWDMSKK 240
RKNTEFDIAK SIELLASSFL KIERARMDLY RETERMRVEA EIKKGEMELK RTEIMAKTHL 300
QIAKLFAKRL KECSSKTGGS SSVTAEVDNH AKKGENG
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 1e-45 | sequence-specific DNA binding transcription factors |
